Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03445 and AO353_03450 are separated by 112 nucleotides AO353_03450 and AO353_03455 are separated by 107 nucleotides AO353_03455 and AO353_03460 are separated by 36 nucleotides
AO353_03445: AO353_03445 - TonB-dependent receptor, at 734,147 to 736,711
_03445
AO353_03450: AO353_03450 - heme oxygenase, at 736,824 to 737,432
_03450
AO353_03455: AO353_03455 - acyl-CoA transferase, at 737,540 to 738,886
_03455
AO353_03460: AO353_03460 - 3-methyladenine DNA glycosylase 2, at 738,923 to 739,786
_03460
Position (kb) 737
738
739 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 736.562 kb on + strand at 736.562 kb on + strand at 736.562 kb on + strand at 736.562 kb on + strand at 736.563 kb on - strand at 736.563 kb on - strand at 736.563 kb on - strand at 736.563 kb on - strand at 736.563 kb on - strand at 736.563 kb on - strand at 736.583 kb on + strand at 736.583 kb on + strand at 736.583 kb on + strand at 736.584 kb on - strand at 736.584 kb on - strand at 736.584 kb on - strand at 736.610 kb on + strand at 736.791 kb on + strand at 736.791 kb on + strand at 736.791 kb on + strand at 736.791 kb on + strand at 736.792 kb on - strand at 736.792 kb on - strand at 736.838 kb on + strand at 736.838 kb on + strand at 736.839 kb on - strand at 736.886 kb on + strand, within AO353_03450 at 736.887 kb on - strand, within AO353_03450 at 736.887 kb on - strand, within AO353_03450 at 736.887 kb on - strand, within AO353_03450 at 736.887 kb on - strand, within AO353_03450 at 736.977 kb on + strand, within AO353_03450 at 736.978 kb on - strand, within AO353_03450 at 736.978 kb on - strand, within AO353_03450 at 737.007 kb on + strand, within AO353_03450 at 737.007 kb on + strand, within AO353_03450 at 737.007 kb on + strand, within AO353_03450 at 737.007 kb on + strand, within AO353_03450 at 737.008 kb on - strand, within AO353_03450 at 737.008 kb on - strand, within AO353_03450 at 737.008 kb on - strand, within AO353_03450 at 737.008 kb on - strand, within AO353_03450 at 737.008 kb on - strand, within AO353_03450 at 737.008 kb on - strand, within AO353_03450 at 737.406 kb on + strand at 737.406 kb on + strand at 737.406 kb on + strand at 737.407 kb on - strand at 737.407 kb on - strand at 737.407 kb on - strand at 737.407 kb on - strand at 737.407 kb on - strand at 737.468 kb on + strand at 737.469 kb on - strand at 737.469 kb on - strand at 737.469 kb on - strand at 737.508 kb on + strand at 737.508 kb on + strand at 737.508 kb on + strand at 737.508 kb on + strand at 737.508 kb on + strand at 737.509 kb on - strand at 737.509 kb on - strand at 737.509 kb on - strand at 737.509 kb on - strand at 737.509 kb on - strand at 737.509 kb on - strand at 737.509 kb on - strand at 737.509 kb on - strand at 737.509 kb on - strand at 737.509 kb on - strand at 737.512 kb on - strand at 737.602 kb on + strand at 737.602 kb on + strand at 737.603 kb on - strand at 737.603 kb on - strand at 737.823 kb on - strand, within AO353_03455 at 737.823 kb on - strand, within AO353_03455 at 737.915 kb on - strand, within AO353_03455 at 738.642 kb on + strand, within AO353_03455 at 738.642 kb on + strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.807 kb on + strand at 738.808 kb on - strand at 738.808 kb on - strand at 738.820 kb on - strand at 738.967 kb on - strand at 738.967 kb on - strand at 739.113 kb on + strand, within AO353_03460 at 739.113 kb on + strand, within AO353_03460 at 739.114 kb on - strand, within AO353_03460 at 739.114 kb on - strand, within AO353_03460 at 739.162 kb on + strand, within AO353_03460 at 739.345 kb on - strand, within AO353_03460 at 739.416 kb on - strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.604 kb on + strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.618 kb on + strand, within AO353_03460 at 739.618 kb on + strand, within AO353_03460 at 739.619 kb on - strand, within AO353_03460 at 739.633 kb on + strand, within AO353_03460 at 739.755 kb on + strand at 739.755 kb on + strand at 739.756 kb on - strand at 739.767 kb on + strand at 739.768 kb on - strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.878 kb on - strand at 739.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM remove 736,562 + -0.8 736,562 + -0.4 736,562 + -0.0 736,562 + -1.0 736,563 - -0.3 736,563 - -2.2 736,563 - -0.9 736,563 - -0.3 736,563 - -0.0 736,563 - -1.8 736,583 + +1.0 736,583 + -0.3 736,583 + +0.5 736,584 - -0.6 736,584 - +2.4 736,584 - +1.7 736,610 + +0.5 736,791 + -1.6 736,791 + -2.0 736,791 + +0.1 736,791 + +0.4 736,792 - -0.1 736,792 - -0.6 736,838 + -1.8 736,838 + -0.0 736,839 - -1.8 736,886 + AO353_03450 0.10 +2.8 736,887 - AO353_03450 0.10 +2.2 736,887 - AO353_03450 0.10 +0.4 736,887 - AO353_03450 0.10 +0.7 736,887 - AO353_03450 0.10 +1.0 736,977 + AO353_03450 0.25 -1.5 736,978 - AO353_03450 0.25 +2.3 736,978 - AO353_03450 0.25 -0.0 737,007 + AO353_03450 0.30 +1.5 737,007 + AO353_03450 0.30 +0.6 737,007 + AO353_03450 0.30 -1.4 737,007 + AO353_03450 0.30 -1.6 737,008 - AO353_03450 0.30 +2.5 737,008 - AO353_03450 0.30 -0.6 737,008 - AO353_03450 0.30 -0.0 737,008 - AO353_03450 0.30 +1.8 737,008 - AO353_03450 0.30 -0.5 737,008 - AO353_03450 0.30 +2.0 737,406 + -0.3 737,406 + +0.5 737,406 + -1.0 737,407 - +0.6 737,407 - +1.3 737,407 - +0.4 737,407 - +0.9 737,407 - -2.0 737,468 + +1.0 737,469 - +0.5 737,469 - -0.0 737,469 - +1.4 737,508 + +0.9 737,508 + +1.0 737,508 + -1.0 737,508 + +1.8 737,508 + -0.5 737,509 - +0.7 737,509 - +1.0 737,509 - +0.6 737,509 - +1.4 737,509 - +0.1 737,509 - +1.5 737,509 - +0.3 737,509 - +0.1 737,509 - -0.8 737,509 - +0.5 737,512 - +1.0 737,602 + +1.3 737,602 + +1.0 737,603 - +0.9 737,603 - -2.1 737,823 - AO353_03455 0.21 +0.8 737,823 - AO353_03455 0.21 +1.0 737,915 - AO353_03455 0.28 +1.0 738,642 + AO353_03455 0.82 -2.0 738,642 + AO353_03455 0.82 +0.2 738,643 - AO353_03455 0.82 +1.0 738,643 - AO353_03455 0.82 +1.2 738,643 - AO353_03455 0.82 +1.3 738,643 - AO353_03455 0.82 -1.4 738,643 - AO353_03455 0.82 -1.6 738,643 - AO353_03455 0.82 +2.5 738,643 - AO353_03455 0.82 +0.4 738,643 - AO353_03455 0.82 +1.4 738,643 - AO353_03455 0.82 -0.2 738,643 - AO353_03455 0.82 -2.2 738,807 + -0.3 738,808 - -0.0 738,808 - +0.2 738,820 - +1.0 738,967 - -1.2 738,967 - +0.7 739,113 + AO353_03460 0.22 -0.2 739,113 + AO353_03460 0.22 -0.6 739,114 - AO353_03460 0.22 -0.8 739,114 - AO353_03460 0.22 -1.5 739,162 + AO353_03460 0.28 -0.3 739,345 - AO353_03460 0.49 +1.0 739,416 - AO353_03460 0.57 -0.0 739,454 + AO353_03460 0.61 +1.1 739,454 + AO353_03460 0.61 +1.0 739,454 + AO353_03460 0.61 -1.6 739,454 + AO353_03460 0.61 -0.0 739,454 + AO353_03460 0.61 -1.0 739,454 + AO353_03460 0.61 +0.2 739,454 + AO353_03460 0.61 -0.0 739,604 + AO353_03460 0.79 +0.2 739,605 - AO353_03460 0.79 +0.6 739,605 - AO353_03460 0.79 +0.3 739,605 - AO353_03460 0.79 +2.2 739,605 - AO353_03460 0.79 -1.6 739,605 - AO353_03460 0.79 +1.0 739,618 + AO353_03460 0.80 +0.6 739,618 + AO353_03460 0.80 -0.6 739,619 - AO353_03460 0.81 -1.0 739,633 + AO353_03460 0.82 -0.2 739,755 + -1.2 739,755 + +1.4 739,756 - +0.4 739,767 + +0.2 739,768 - -1.4 739,834 + +1.0 739,834 + -1.0 739,834 + -0.1 739,834 + +0.3 739,834 + +0.2 739,834 + +1.6 739,835 - -1.2 739,835 - -0.7 739,835 - +0.4 739,835 - +0.2 739,835 - +1.4 739,835 - -0.6 739,878 - +1.0 739,878 - -1.6
Or see this region's nucleotide sequence