Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03450

Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03445 and AO353_03450 are separated by 112 nucleotidesAO353_03450 and AO353_03455 are separated by 107 nucleotides AO353_03445: AO353_03445 - TonB-dependent receptor, at 734,147 to 736,711 _03445 AO353_03450: AO353_03450 - heme oxygenase, at 736,824 to 737,432 _03450 AO353_03455: AO353_03455 - acyl-CoA transferase, at 737,540 to 738,886 _03455 Position (kb) 736 737 738Strain fitness (log2 ratio) -2 -1 0 1 2 3at 735.911 kb on + strand, within AO353_03445at 735.911 kb on + strand, within AO353_03445at 735.911 kb on + strand, within AO353_03445at 735.912 kb on - strand, within AO353_03445at 735.912 kb on - strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.929 kb on + strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.930 kb on - strand, within AO353_03445at 735.938 kb on + strand, within AO353_03445at 735.986 kb on + strand, within AO353_03445at 735.986 kb on + strand, within AO353_03445at 735.986 kb on + strand, within AO353_03445at 735.987 kb on - strand, within AO353_03445at 735.987 kb on - strand, within AO353_03445at 736.064 kb on + strand, within AO353_03445at 736.064 kb on + strand, within AO353_03445at 736.065 kb on - strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strandat 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.121 kb on + strand, within AO353_03445at 736.122 kb on - strand, within AO353_03445at 736.122 kb on - strand, within AO353_03445at 736.122 kb on - strand, within AO353_03445at 736.122 kb on - strand, within AO353_03445at 736.122 kb on - strand, within AO353_03445at 736.122 kb on - strand, within AO353_03445at 736.122 kb on - strand, within AO353_03445at 736.122 kb on - strand, within AO353_03445at 736.122 kb on - strand, within AO353_03445at 736.123 kb on + strand, within AO353_03445at 736.124 kb on - strand, within AO353_03445at 736.124 kb on - strand, within AO353_03445at 736.130 kb on + strand, within AO353_03445at 736.130 kb on + strand, within AO353_03445at 736.130 kb on + strand, within AO353_03445at 736.130 kb on + strand, within AO353_03445at 736.130 kb on + strand, within AO353_03445at 736.131 kb on - strand, within AO353_03445at 736.131 kb on - strand, within AO353_03445at 736.169 kb on + strand, within AO353_03445at 736.169 kb on + strand, within AO353_03445at 736.169 kb on + strand, within AO353_03445at 736.170 kb on - strand, within AO353_03445at 736.170 kb on - strand, within AO353_03445at 736.170 kb on - strand, within AO353_03445at 736.277 kb on + strand, within AO353_03445at 736.277 kb on + strand, within AO353_03445at 736.277 kb on + strand, within AO353_03445at 736.278 kb on - strand, within AO353_03445at 736.278 kb on - strand, within AO353_03445at 736.278 kb on - strand, within AO353_03445at 736.278 kb on - strand, within AO353_03445at 736.298 kb on + strand, within AO353_03445at 736.298 kb on + strand, within AO353_03445at 736.298 kb on + strand, within AO353_03445at 736.298 kb on + strand, within AO353_03445at 736.299 kb on - strand, within AO353_03445at 736.299 kb on - strand, within AO353_03445at 736.299 kb on - strand, within AO353_03445at 736.299 kb on - strand, within AO353_03445at 736.376 kb on + strand, within AO353_03445at 736.376 kb on + strand, within AO353_03445at 736.376 kb on + strand, within AO353_03445at 736.391 kb on + strand, within AO353_03445at 736.391 kb on + strand, within AO353_03445at 736.391 kb on + strand, within AO353_03445at 736.391 kb on + strand, within AO353_03445at 736.391 kb on + strand, within AO353_03445at 736.391 kb on + strand, within AO353_03445at 736.391 kb on + strand, within AO353_03445at 736.391 kb on + strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.392 kb on - strand, within AO353_03445at 736.497 kb on - strandat 736.523 kb on + strandat 736.523 kb on + strandat 736.523 kb on + strandat 736.523 kb on + strandat 736.523 kb on + strandat 736.523 kb on + strandat 736.524 kb on - strandat 736.524 kb on - strandat 736.562 kb on + strandat 736.562 kb on + strandat 736.562 kb on + strandat 736.562 kb on + strandat 736.563 kb on - strandat 736.563 kb on - strandat 736.563 kb on - strandat 736.563 kb on - strandat 736.563 kb on - strandat 736.563 kb on - strandat 736.583 kb on + strandat 736.583 kb on + strandat 736.583 kb on + strandat 736.584 kb on - strandat 736.584 kb on - strandat 736.584 kb on - strandat 736.610 kb on + strandat 736.791 kb on + strandat 736.791 kb on + strandat 736.791 kb on + strandat 736.791 kb on + strandat 736.792 kb on - strandat 736.792 kb on - strandat 736.838 kb on + strandat 736.838 kb on + strandat 736.839 kb on - strandat 736.886 kb on + strand, within AO353_03450at 736.887 kb on - strand, within AO353_03450at 736.887 kb on - strand, within AO353_03450at 736.887 kb on - strand, within AO353_03450at 736.887 kb on - strand, within AO353_03450at 736.977 kb on + strand, within AO353_03450at 736.978 kb on - strand, within AO353_03450at 736.978 kb on - strand, within AO353_03450at 737.007 kb on + strand, within AO353_03450at 737.007 kb on + strand, within AO353_03450at 737.007 kb on + strand, within AO353_03450at 737.007 kb on + strand, within AO353_03450at 737.008 kb on - strand, within AO353_03450at 737.008 kb on - strand, within AO353_03450at 737.008 kb on - strand, within AO353_03450at 737.008 kb on - strand, within AO353_03450at 737.008 kb on - strand, within AO353_03450at 737.008 kb on - strand, within AO353_03450at 737.406 kb on + strandat 737.406 kb on + strandat 737.406 kb on + strandat 737.407 kb on - strandat 737.407 kb on - strandat 737.407 kb on - strandat 737.407 kb on - strandat 737.407 kb on - strandat 737.468 kb on + strandat 737.469 kb on - strandat 737.469 kb on - strandat 737.469 kb on - strandat 737.508 kb on + strandat 737.508 kb on + strandat 737.508 kb on + strandat 737.508 kb on + strandat 737.508 kb on + strandat 737.509 kb on - strandat 737.509 kb on - strandat 737.509 kb on - strandat 737.509 kb on - strandat 737.509 kb on - strandat 737.509 kb on - strandat 737.509 kb on - strandat 737.509 kb on - strandat 737.509 kb on - strandat 737.509 kb on - strandat 737.512 kb on - strandat 737.602 kb on + strandat 737.602 kb on + strandat 737.603 kb on - strandat 737.603 kb on - strandat 737.823 kb on - strand, within AO353_03455at 737.823 kb on - strand, within AO353_03455at 737.915 kb on - strand, within AO353_03455

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM
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735,911 + AO353_03445 0.69 +0.4
735,911 + AO353_03445 0.69 +2.0
735,911 + AO353_03445 0.69 -0.9
735,912 - AO353_03445 0.69 +0.1
735,912 - AO353_03445 0.69 -0.0
735,929 + AO353_03445 0.69 +0.4
735,929 + AO353_03445 0.69 -1.2
735,929 + AO353_03445 0.69 -0.4
735,929 + AO353_03445 0.69 +0.0
735,929 + AO353_03445 0.69 +0.6
735,929 + AO353_03445 0.69 +0.4
735,929 + AO353_03445 0.69 +0.5
735,929 + AO353_03445 0.69 +1.0
735,929 + AO353_03445 0.69 +0.0
735,929 + AO353_03445 0.69 -0.0
735,929 + AO353_03445 0.69 +1.0
735,929 + AO353_03445 0.69 -1.2
735,929 + AO353_03445 0.69 +2.2
735,929 + AO353_03445 0.69 -0.0
735,929 + AO353_03445 0.69 -1.0
735,929 + AO353_03445 0.69 +0.4
735,929 + AO353_03445 0.69 +0.1
735,929 + AO353_03445 0.69 -0.1
735,929 + AO353_03445 0.69 +1.0
735,929 + AO353_03445 0.69 +1.5
735,930 - AO353_03445 0.70 +0.4
735,930 - AO353_03445 0.70 +0.4
735,930 - AO353_03445 0.70 +0.5
735,930 - AO353_03445 0.70 +1.3
735,930 - AO353_03445 0.70 +0.6
735,930 - AO353_03445 0.70 -1.4
735,930 - AO353_03445 0.70 +1.4
735,930 - AO353_03445 0.70 +0.1
735,930 - AO353_03445 0.70 -2.5
735,930 - AO353_03445 0.70 +0.6
735,930 - AO353_03445 0.70 -0.2
735,930 - AO353_03445 0.70 +1.3
735,930 - AO353_03445 0.70 +0.7
735,938 + AO353_03445 0.70 -0.9
735,986 + AO353_03445 0.72 +1.2
735,986 + AO353_03445 0.72 -0.4
735,986 + AO353_03445 0.72 +2.0
735,987 - AO353_03445 0.72 +1.4
735,987 - AO353_03445 0.72 -0.2
736,064 + AO353_03445 0.75 +1.0
736,064 + AO353_03445 0.75 +0.5
736,065 - AO353_03445 0.75 -0.8
736,121 + AO353_03445 0.77 -1.4
736,121 + AO353_03445 0.77 +1.5
736,121 + AO353_03445 0.77 -1.2
736,121 + AO353_03445 0.77 +0.2
736,121 + AO353_03445 0.77 -0.8
736,121 + -0.0
736,121 + AO353_03445 0.77 +1.0
736,121 + AO353_03445 0.77 -0.5
736,121 + AO353_03445 0.77 +2.0
736,121 + AO353_03445 0.77 -0.0
736,121 + AO353_03445 0.77 -0.0
736,121 + AO353_03445 0.77 -0.8
736,121 + AO353_03445 0.77 -1.0
736,121 + AO353_03445 0.77 -1.8
736,121 + AO353_03445 0.77 -0.4
736,121 + AO353_03445 0.77 +1.2
736,121 + AO353_03445 0.77 -1.4
736,122 - AO353_03445 0.77 -0.2
736,122 - AO353_03445 0.77 +1.6
736,122 - AO353_03445 0.77 +1.7
736,122 - AO353_03445 0.77 +0.8
736,122 - AO353_03445 0.77 -2.5
736,122 - AO353_03445 0.77 -1.6
736,122 - AO353_03445 0.77 +1.2
736,122 - AO353_03445 0.77 +0.2
736,122 - AO353_03445 0.77 -0.6
736,123 + AO353_03445 0.77 -0.4
736,124 - AO353_03445 0.77 -0.8
736,124 - AO353_03445 0.77 -1.0
736,130 + AO353_03445 0.77 +0.2
736,130 + AO353_03445 0.77 +1.0
736,130 + AO353_03445 0.77 +0.6
736,130 + AO353_03445 0.77 -1.2
736,130 + AO353_03445 0.77 -0.5
736,131 - AO353_03445 0.77 +1.0
736,131 - AO353_03445 0.77 -0.3
736,169 + AO353_03445 0.79 +1.0
736,169 + AO353_03445 0.79 +0.5
736,169 + AO353_03445 0.79 -0.6
736,170 - AO353_03445 0.79 -0.4
736,170 - AO353_03445 0.79 -0.2
736,170 - AO353_03445 0.79 -0.4
736,277 + AO353_03445 0.83 -0.7
736,277 + AO353_03445 0.83 +0.5
736,277 + AO353_03445 0.83 -1.4
736,278 - AO353_03445 0.83 -0.6
736,278 - AO353_03445 0.83 -0.0
736,278 - AO353_03445 0.83 +0.4
736,278 - AO353_03445 0.83 +0.7
736,298 + AO353_03445 0.84 +2.0
736,298 + AO353_03445 0.84 +3.0
736,298 + AO353_03445 0.84 -0.8
736,298 + AO353_03445 0.84 +1.0
736,299 - AO353_03445 0.84 +1.0
736,299 - AO353_03445 0.84 -1.6
736,299 - AO353_03445 0.84 -0.3
736,299 - AO353_03445 0.84 +0.4
736,376 + AO353_03445 0.87 -1.6
736,376 + AO353_03445 0.87 -1.4
736,376 + AO353_03445 0.87 +0.5
736,391 + AO353_03445 0.87 -1.0
736,391 + AO353_03445 0.87 -1.2
736,391 + AO353_03445 0.87 -0.0
736,391 + AO353_03445 0.87 -0.6
736,391 + AO353_03445 0.87 -1.8
736,391 + AO353_03445 0.87 +0.3
736,391 + AO353_03445 0.87 -1.0
736,391 + AO353_03445 0.87 +0.7
736,392 - AO353_03445 0.88 -1.0
736,392 - AO353_03445 0.88 +0.3
736,392 - AO353_03445 0.88 -2.5
736,392 - AO353_03445 0.88 -0.2
736,392 - AO353_03445 0.88 -1.0
736,392 - AO353_03445 0.88 -0.2
736,392 - AO353_03445 0.88 -0.0
736,392 - AO353_03445 0.88 -2.6
736,392 - AO353_03445 0.88 -1.6
736,392 - AO353_03445 0.88 +0.2
736,392 - AO353_03445 0.88 -0.6
736,497 - +1.0
736,523 + +2.3
736,523 + +1.4
736,523 + -0.2
736,523 + +1.0
736,523 + +0.5
736,523 + -0.3
736,524 - -1.3
736,524 - -1.5
736,562 + -0.8
736,562 + -0.4
736,562 + -0.0
736,562 + -1.0
736,563 - -0.3
736,563 - -2.2
736,563 - -0.9
736,563 - -0.3
736,563 - -0.0
736,563 - -1.8
736,583 + +1.0
736,583 + -0.3
736,583 + +0.5
736,584 - -0.6
736,584 - +2.4
736,584 - +1.7
736,610 + +0.5
736,791 + -1.6
736,791 + -2.0
736,791 + +0.1
736,791 + +0.4
736,792 - -0.1
736,792 - -0.6
736,838 + -1.8
736,838 + -0.0
736,839 - -1.8
736,886 + AO353_03450 0.10 +2.8
736,887 - AO353_03450 0.10 +2.2
736,887 - AO353_03450 0.10 +0.4
736,887 - AO353_03450 0.10 +0.7
736,887 - AO353_03450 0.10 +1.0
736,977 + AO353_03450 0.25 -1.5
736,978 - AO353_03450 0.25 +2.3
736,978 - AO353_03450 0.25 -0.0
737,007 + AO353_03450 0.30 +1.5
737,007 + AO353_03450 0.30 +0.6
737,007 + AO353_03450 0.30 -1.4
737,007 + AO353_03450 0.30 -1.6
737,008 - AO353_03450 0.30 +2.5
737,008 - AO353_03450 0.30 -0.6
737,008 - AO353_03450 0.30 -0.0
737,008 - AO353_03450 0.30 +1.8
737,008 - AO353_03450 0.30 -0.5
737,008 - AO353_03450 0.30 +2.0
737,406 + -0.3
737,406 + +0.5
737,406 + -1.0
737,407 - +0.6
737,407 - +1.3
737,407 - +0.4
737,407 - +0.9
737,407 - -2.0
737,468 + +1.0
737,469 - +0.5
737,469 - -0.0
737,469 - +1.4
737,508 + +0.9
737,508 + +1.0
737,508 + -1.0
737,508 + +1.8
737,508 + -0.5
737,509 - +0.7
737,509 - +1.0
737,509 - +0.6
737,509 - +1.4
737,509 - +0.1
737,509 - +1.5
737,509 - +0.3
737,509 - +0.1
737,509 - -0.8
737,509 - +0.5
737,512 - +1.0
737,602 + +1.3
737,602 + +1.0
737,603 - +0.9
737,603 - -2.1
737,823 - AO353_03455 0.21 +0.8
737,823 - AO353_03455 0.21 +1.0
737,915 - AO353_03455 0.28 +1.0

Or see this region's nucleotide sequence