Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03110 and AO353_03115 are separated by 202 nucleotides AO353_03115 and AO353_03120 are separated by 163 nucleotides AO353_03120 and AO353_03125 overlap by 16 nucleotides AO353_03125 and AO353_03130 are separated by 78 nucleotides
AO353_03110: AO353_03110 - hydrolase, at 666,118 to 667,173
_03110
AO353_03115: AO353_03115 - TetR family transcriptional regulator, at 667,376 to 667,990
_03115
AO353_03120: AO353_03120 - hypothetical protein, at 668,154 to 668,693
_03120
AO353_03125: AO353_03125 - LysR family transcriptional regulator, at 668,678 to 669,577
_03125
AO353_03130: AO353_03130 - hypothetical protein, at 669,656 to 670,366
_03130
Position (kb) 668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 667.157 kb on + strand at 667.157 kb on + strand at 667.158 kb on - strand at 667.177 kb on + strand at 667.177 kb on + strand at 667.177 kb on + strand at 667.177 kb on + strand at 667.177 kb on + strand at 667.177 kb on + strand at 667.177 kb on + strand at 667.177 kb on + strand at 667.178 kb on - strand at 667.178 kb on - strand at 667.178 kb on - strand at 667.178 kb on - strand at 667.228 kb on - strand at 667.264 kb on + strand at 667.283 kb on + strand at 667.283 kb on + strand at 667.283 kb on + strand at 667.297 kb on + strand at 667.298 kb on - strand at 667.344 kb on + strand at 667.345 kb on - strand at 667.345 kb on - strand at 667.371 kb on + strand at 667.372 kb on - strand at 667.375 kb on + strand at 667.375 kb on + strand at 667.375 kb on + strand at 667.375 kb on + strand at 667.375 kb on + strand at 667.375 kb on + strand at 667.376 kb on - strand at 667.376 kb on - strand at 667.376 kb on - strand at 667.376 kb on - strand at 667.376 kb on - strand at 667.406 kb on - strand at 667.517 kb on + strand, within AO353_03115 at 667.517 kb on + strand, within AO353_03115 at 667.518 kb on - strand, within AO353_03115 at 667.518 kb on - strand, within AO353_03115 at 667.518 kb on - strand, within AO353_03115 at 667.827 kb on + strand, within AO353_03115 at 667.828 kb on - strand, within AO353_03115 at 667.828 kb on - strand, within AO353_03115 at 667.941 kb on + strand at 667.941 kb on + strand at 667.941 kb on + strand at 667.941 kb on + strand at 667.942 kb on - strand at 667.942 kb on - strand at 667.942 kb on - strand at 667.942 kb on - strand at 667.942 kb on - strand at 667.973 kb on + strand at 667.973 kb on + strand at 667.974 kb on - strand at 667.974 kb on - strand at 667.974 kb on - strand at 668.026 kb on + strand at 668.026 kb on + strand at 668.026 kb on + strand at 668.027 kb on - strand at 668.027 kb on - strand at 668.039 kb on - strand at 668.062 kb on + strand at 668.062 kb on + strand at 668.062 kb on + strand at 668.062 kb on + strand at 668.070 kb on + strand at 668.071 kb on - strand at 668.115 kb on + strand at 668.115 kb on + strand at 668.116 kb on - strand at 668.116 kb on - strand at 668.116 kb on - strand at 668.117 kb on + strand at 668.117 kb on + strand at 668.117 kb on + strand at 668.117 kb on + strand at 668.117 kb on + strand at 668.117 kb on + strand at 668.117 kb on + strand at 668.117 kb on + strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.118 kb on - strand at 668.427 kb on + strand, within AO353_03120 at 668.427 kb on + strand, within AO353_03120 at 668.427 kb on + strand, within AO353_03120 at 668.428 kb on - strand, within AO353_03120 at 668.503 kb on + strand, within AO353_03120 at 668.504 kb on - strand, within AO353_03120 at 668.504 kb on - strand, within AO353_03120 at 668.572 kb on + strand, within AO353_03120 at 668.572 kb on + strand, within AO353_03120 at 668.572 kb on + strand, within AO353_03120 at 668.572 kb on + strand, within AO353_03120 at 668.573 kb on - strand, within AO353_03120 at 668.717 kb on + strand at 668.718 kb on - strand at 668.718 kb on - strand at 668.718 kb on - strand at 668.794 kb on - strand, within AO353_03125 at 668.883 kb on - strand, within AO353_03125 at 668.911 kb on + strand, within AO353_03125 at 668.911 kb on + strand, within AO353_03125 at 668.911 kb on + strand, within AO353_03125 at 668.912 kb on - strand, within AO353_03125 at 668.912 kb on - strand, within AO353_03125 at 669.043 kb on - strand, within AO353_03125 at 669.043 kb on - strand, within AO353_03125 at 669.236 kb on + strand, within AO353_03125 at 669.236 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.387 kb on + strand, within AO353_03125 at 669.388 kb on - strand, within AO353_03125 at 669.388 kb on - strand, within AO353_03125 at 669.388 kb on - strand, within AO353_03125 at 669.480 kb on - strand, within AO353_03125 at 669.616 kb on + strand at 669.616 kb on + strand at 669.617 kb on - strand at 669.617 kb on - strand at 669.617 kb on - strand at 669.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM remove 667,157 + -1.9 667,157 + -1.8 667,158 - +0.7 667,177 + -0.8 667,177 + -0.6 667,177 + +1.5 667,177 + +0.4 667,177 + +0.4 667,177 + -1.4 667,177 + -0.1 667,177 + +0.9 667,178 - -0.8 667,178 - -0.1 667,178 - +0.9 667,178 - +1.9 667,228 - +0.8 667,264 + -0.2 667,283 + -0.6 667,283 + -1.1 667,283 + -0.3 667,297 + -0.5 667,298 - -1.6 667,344 + -1.6 667,345 - -0.2 667,345 - -2.4 667,371 + -1.1 667,372 - +1.4 667,375 + +0.9 667,375 + +1.5 667,375 + +1.5 667,375 + +0.4 667,375 + -3.0 667,375 + +1.3 667,376 - +0.4 667,376 - +1.9 667,376 - +0.0 667,376 - +3.2 667,376 - -0.5 667,406 - +0.6 667,517 + AO353_03115 0.23 -1.9 667,517 + AO353_03115 0.23 +0.8 667,518 - AO353_03115 0.23 +0.8 667,518 - AO353_03115 0.23 +0.9 667,518 - AO353_03115 0.23 +1.5 667,827 + AO353_03115 0.73 +0.3 667,828 - AO353_03115 0.73 +0.9 667,828 - AO353_03115 0.73 -0.5 667,941 + -0.1 667,941 + -1.4 667,941 + -0.6 667,941 + -0.5 667,942 - +1.9 667,942 - +0.5 667,942 - -0.4 667,942 - +0.9 667,942 - -1.2 667,973 + -0.6 667,973 + +0.4 667,974 - +0.9 667,974 - -1.6 667,974 - +0.9 668,026 + +1.9 668,026 + -0.1 668,026 + -0.1 668,027 - +0.5 668,027 - +0.1 668,039 - +0.4 668,062 + +0.2 668,062 + -0.0 668,062 + +2.3 668,062 + +1.0 668,070 + -0.0 668,071 - -0.2 668,115 + -0.6 668,115 + +0.8 668,116 - -0.1 668,116 - +0.6 668,116 - -0.9 668,117 + +0.7 668,117 + -0.6 668,117 + +0.5 668,117 + -0.0 668,117 + -0.2 668,117 + +2.3 668,117 + +1.0 668,117 + +1.3 668,118 - +1.0 668,118 - +1.1 668,118 - -1.9 668,118 - -1.4 668,118 - +1.0 668,118 - -2.0 668,118 - -1.6 668,118 - -0.6 668,118 - -0.6 668,118 - -0.3 668,118 - -0.9 668,118 - +1.4 668,118 - +2.2 668,118 - -0.5 668,427 + AO353_03120 0.51 +1.2 668,427 + AO353_03120 0.51 +1.0 668,427 + AO353_03120 0.51 +0.8 668,428 - AO353_03120 0.51 -0.6 668,503 + AO353_03120 0.65 +0.8 668,504 - AO353_03120 0.65 +1.4 668,504 - AO353_03120 0.65 -0.6 668,572 + AO353_03120 0.77 -0.5 668,572 + AO353_03120 0.77 +0.6 668,572 + AO353_03120 0.77 -0.0 668,572 + AO353_03120 0.77 +1.0 668,573 - AO353_03120 0.78 -1.6 668,717 + -0.6 668,718 - -0.4 668,718 - +1.6 668,718 - -0.9 668,794 - AO353_03125 0.13 -1.3 668,883 - AO353_03125 0.23 +1.6 668,911 + AO353_03125 0.26 +0.8 668,911 + AO353_03125 0.26 +0.3 668,911 + AO353_03125 0.26 -0.9 668,912 - AO353_03125 0.26 -0.6 668,912 - AO353_03125 0.26 +0.6 669,043 - AO353_03125 0.41 -1.6 669,043 - AO353_03125 0.41 +0.5 669,236 + AO353_03125 0.62 +3.0 669,236 + AO353_03125 0.62 +2.5 669,387 + AO353_03125 0.79 +0.4 669,387 + AO353_03125 0.79 -1.9 669,387 + AO353_03125 0.79 +1.0 669,387 + AO353_03125 0.79 +0.5 669,388 - AO353_03125 0.79 -0.0 669,388 - AO353_03125 0.79 +0.7 669,388 - AO353_03125 0.79 +0.2 669,480 - AO353_03125 0.89 +0.1 669,616 + -0.0 669,616 + -0.5 669,617 - +0.4 669,617 - +0.2 669,617 - -0.0 669,680 - -0.4
Or see this region's nucleotide sequence