Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01310 and AO353_01315 are separated by 140 nucleotides AO353_01315 and AO353_01320 are separated by 79 nucleotides
AO353_01310: AO353_01310 - radical SAM protein, at 284,196 to 285,164
_01310
AO353_01315: AO353_01315 - TetR family transcriptional regulator, at 285,305 to 285,943
_01315
AO353_01320: AO353_01320 - class V aminotransferase, at 286,023 to 287,156
_01320
Position (kb) 285
286 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 284.333 kb on - strand, within AO353_01310 at 284.333 kb on - strand, within AO353_01310 at 284.333 kb on - strand, within AO353_01310 at 284.333 kb on - strand, within AO353_01310 at 284.333 kb on - strand, within AO353_01310 at 284.333 kb on - strand, within AO353_01310 at 284.333 kb on - strand, within AO353_01310 at 284.333 kb on - strand, within AO353_01310 at 284.506 kb on + strand, within AO353_01310 at 284.507 kb on - strand, within AO353_01310 at 284.512 kb on + strand, within AO353_01310 at 284.512 kb on + strand, within AO353_01310 at 284.644 kb on + strand, within AO353_01310 at 284.645 kb on - strand, within AO353_01310 at 284.645 kb on - strand, within AO353_01310 at 285.007 kb on + strand, within AO353_01310 at 285.007 kb on + strand, within AO353_01310 at 285.008 kb on - strand, within AO353_01310 at 285.085 kb on + strand at 285.085 kb on + strand at 285.085 kb on + strand at 285.085 kb on + strand at 285.085 kb on + strand at 285.085 kb on + strand at 285.085 kb on + strand at 285.085 kb on + strand at 285.085 kb on + strand at 285.086 kb on - strand at 285.086 kb on - strand at 285.086 kb on - strand at 285.086 kb on - strand at 285.086 kb on - strand at 285.086 kb on - strand at 285.089 kb on + strand at 285.089 kb on + strand at 285.089 kb on + strand at 285.089 kb on + strand at 285.090 kb on - strand at 285.090 kb on - strand at 285.090 kb on - strand at 285.097 kb on + strand at 285.097 kb on + strand at 285.097 kb on + strand at 285.097 kb on + strand at 285.097 kb on + strand at 285.097 kb on + strand at 285.097 kb on + strand at 285.098 kb on - strand at 285.098 kb on - strand at 285.098 kb on - strand at 285.098 kb on - strand at 285.183 kb on + strand at 285.183 kb on + strand at 285.184 kb on - strand at 285.184 kb on - strand at 285.224 kb on + strand at 285.230 kb on + strand at 285.230 kb on + strand at 285.231 kb on - strand at 285.231 kb on - strand at 285.244 kb on + strand at 285.244 kb on + strand at 285.245 kb on - strand at 285.245 kb on - strand at 285.245 kb on - strand at 285.245 kb on - strand at 285.247 kb on - strand at 285.247 kb on - strand at 285.267 kb on + strand at 285.267 kb on + strand at 285.267 kb on + strand at 285.268 kb on - strand at 285.288 kb on + strand at 285.289 kb on - strand at 285.426 kb on + strand, within AO353_01315 at 285.427 kb on - strand, within AO353_01315 at 285.468 kb on + strand, within AO353_01315 at 285.468 kb on + strand, within AO353_01315 at 285.469 kb on - strand, within AO353_01315 at 285.478 kb on - strand, within AO353_01315 at 285.478 kb on - strand, within AO353_01315 at 285.478 kb on - strand, within AO353_01315 at 285.669 kb on + strand, within AO353_01315 at 285.670 kb on - strand, within AO353_01315 at 285.670 kb on - strand, within AO353_01315 at 285.691 kb on + strand, within AO353_01315 at 285.742 kb on - strand, within AO353_01315 at 285.762 kb on + strand, within AO353_01315 at 285.762 kb on + strand, within AO353_01315 at 285.762 kb on + strand, within AO353_01315 at 285.762 kb on + strand, within AO353_01315 at 285.762 kb on + strand, within AO353_01315 at 285.762 kb on + strand, within AO353_01315 at 285.762 kb on + strand, within AO353_01315 at 285.763 kb on - strand, within AO353_01315 at 285.763 kb on - strand, within AO353_01315 at 285.763 kb on - strand, within AO353_01315 at 285.763 kb on - strand, within AO353_01315 at 285.763 kb on - strand, within AO353_01315 at 285.763 kb on - strand, within AO353_01315 at 285.763 kb on - strand, within AO353_01315 at 285.792 kb on + strand, within AO353_01315 at 285.792 kb on + strand, within AO353_01315 at 285.792 kb on + strand, within AO353_01315 at 285.792 kb on + strand at 285.793 kb on - strand, within AO353_01315 at 285.793 kb on - strand, within AO353_01315 at 285.793 kb on - strand, within AO353_01315 at 285.793 kb on - strand, within AO353_01315 at 285.793 kb on - strand, within AO353_01315 at 285.793 kb on - strand, within AO353_01315 at 285.793 kb on - strand, within AO353_01315 at 285.925 kb on + strand at 285.925 kb on + strand at 285.937 kb on + strand at 285.937 kb on + strand at 285.938 kb on - strand at 285.938 kb on - strand at 285.943 kb on + strand at 285.944 kb on - strand at 285.958 kb on - strand at 285.969 kb on + strand at 285.969 kb on + strand at 285.970 kb on - strand at 285.981 kb on + strand at 285.985 kb on - strand at 285.985 kb on - strand at 285.991 kb on - strand at 285.991 kb on - strand at 285.991 kb on - strand at 285.991 kb on - strand at 286.028 kb on + strand at 286.029 kb on - strand at 286.048 kb on + strand at 286.049 kb on - strand at 286.147 kb on + strand, within AO353_01320 at 286.147 kb on + strand, within AO353_01320 at 286.147 kb on + strand, within AO353_01320 at 286.164 kb on + strand, within AO353_01320 at 286.221 kb on - strand, within AO353_01320 at 286.259 kb on + strand, within AO353_01320 at 286.260 kb on - strand, within AO353_01320 at 286.605 kb on + strand, within AO353_01320 at 286.605 kb on + strand, within AO353_01320 at 286.605 kb on + strand, within AO353_01320 at 286.606 kb on - strand, within AO353_01320 at 286.606 kb on - strand, within AO353_01320 at 286.606 kb on - strand, within AO353_01320 at 286.606 kb on - strand, within AO353_01320 at 286.606 kb on - strand, within AO353_01320 at 286.606 kb on - strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.674 kb on + strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.675 kb on - strand, within AO353_01320 at 286.678 kb on + strand, within AO353_01320 at 286.678 kb on + strand, within AO353_01320 at 286.678 kb on + strand, within AO353_01320 at 286.678 kb on + strand, within AO353_01320 at 286.678 kb on + strand, within AO353_01320 at 286.679 kb on - strand, within AO353_01320 at 286.679 kb on - strand, within AO353_01320 at 286.679 kb on - strand, within AO353_01320 at 286.749 kb on + strand, within AO353_01320 at 286.749 kb on + strand, within AO353_01320 at 286.750 kb on - strand, within AO353_01320 at 286.750 kb on - strand, within AO353_01320 at 286.942 kb on + strand, within AO353_01320
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM remove 284,333 - AO353_01310 0.14 +0.9 284,333 - AO353_01310 0.14 +2.2 284,333 - AO353_01310 0.14 +0.9 284,333 - AO353_01310 0.14 -0.1 284,333 - AO353_01310 0.14 +1.3 284,333 - AO353_01310 0.14 -1.4 284,333 - AO353_01310 0.14 +0.6 284,333 - AO353_01310 0.14 -1.0 284,506 + AO353_01310 0.32 +1.5 284,507 - AO353_01310 0.32 -0.7 284,512 + AO353_01310 0.33 +0.7 284,512 + AO353_01310 0.33 -0.1 284,644 + AO353_01310 0.46 +0.2 284,645 - AO353_01310 0.46 -0.4 284,645 - AO353_01310 0.46 +0.1 285,007 + AO353_01310 0.84 +1.6 285,007 + AO353_01310 0.84 -1.7 285,008 - AO353_01310 0.84 +0.5 285,085 + +0.9 285,085 + +0.6 285,085 + -0.1 285,085 + -0.7 285,085 + +1.0 285,085 + -0.3 285,085 + -1.1 285,085 + +0.3 285,085 + +1.2 285,086 - +1.3 285,086 - +0.2 285,086 - +0.9 285,086 - +0.9 285,086 - -0.5 285,086 - -0.3 285,089 + -0.1 285,089 + -0.7 285,089 + -2.1 285,089 + -0.6 285,090 - -0.1 285,090 - -0.4 285,090 - -1.1 285,097 + +0.3 285,097 + -0.2 285,097 + -1.3 285,097 + +0.2 285,097 + +1.1 285,097 + -1.6 285,097 + -1.4 285,098 - +0.9 285,098 - -2.5 285,098 - +0.9 285,098 - +0.9 285,183 + +2.5 285,183 + +0.6 285,184 - +1.0 285,184 - +0.5 285,224 + -0.4 285,230 + -1.4 285,230 + -0.1 285,231 - +0.3 285,231 - -0.3 285,244 + +0.8 285,244 + -1.8 285,245 - -0.4 285,245 - +0.0 285,245 - +0.9 285,245 - -0.0 285,247 - +1.2 285,247 - -0.7 285,267 + +0.1 285,267 + +2.3 285,267 + -2.1 285,268 - +2.1 285,288 + +1.3 285,289 - +0.9 285,426 + AO353_01315 0.19 +0.5 285,427 - AO353_01315 0.19 +0.9 285,468 + AO353_01315 0.26 +0.9 285,468 + AO353_01315 0.26 -0.8 285,469 - AO353_01315 0.26 +2.6 285,478 - AO353_01315 0.27 -0.4 285,478 - AO353_01315 0.27 +0.8 285,478 - AO353_01315 0.27 -1.4 285,669 + AO353_01315 0.57 -0.7 285,670 - AO353_01315 0.57 +1.0 285,670 - AO353_01315 0.57 +0.9 285,691 + AO353_01315 0.60 +0.1 285,742 - AO353_01315 0.68 -2.6 285,762 + AO353_01315 0.72 +0.9 285,762 + AO353_01315 0.72 +0.2 285,762 + AO353_01315 0.72 -1.4 285,762 + AO353_01315 0.72 -0.8 285,762 + AO353_01315 0.72 +0.4 285,762 + AO353_01315 0.72 +1.2 285,762 + AO353_01315 0.72 -0.7 285,763 - AO353_01315 0.72 +1.5 285,763 - AO353_01315 0.72 +0.9 285,763 - AO353_01315 0.72 +0.9 285,763 - AO353_01315 0.72 +0.9 285,763 - AO353_01315 0.72 +2.9 285,763 - AO353_01315 0.72 -1.7 285,763 - AO353_01315 0.72 +0.9 285,792 + AO353_01315 0.76 +0.6 285,792 + AO353_01315 0.76 -0.7 285,792 + AO353_01315 0.76 +0.1 285,792 + -0.1 285,793 - AO353_01315 0.76 -0.5 285,793 - AO353_01315 0.76 -0.2 285,793 - AO353_01315 0.76 +1.5 285,793 - AO353_01315 0.76 +2.7 285,793 - AO353_01315 0.76 +4.5 285,793 - AO353_01315 0.76 -0.9 285,793 - AO353_01315 0.76 +2.6 285,925 + -0.9 285,925 + +0.7 285,937 + +0.6 285,937 + -0.6 285,938 - +0.1 285,938 - -0.5 285,943 + +1.6 285,944 - +1.2 285,958 - -0.7 285,969 + +2.4 285,969 + +1.0 285,970 - +1.3 285,981 + -0.0 285,985 - -1.1 285,985 - +1.2 285,991 - +1.8 285,991 - -1.6 285,991 - -1.4 285,991 - -1.1 286,028 + +0.2 286,029 - +0.9 286,048 + -0.4 286,049 - +1.2 286,147 + AO353_01320 0.11 -0.3 286,147 + AO353_01320 0.11 -1.3 286,147 + AO353_01320 0.11 -0.1 286,164 + AO353_01320 0.12 +0.4 286,221 - AO353_01320 0.17 -0.7 286,259 + AO353_01320 0.21 +1.4 286,260 - AO353_01320 0.21 -1.1 286,605 + AO353_01320 0.51 +1.3 286,605 + AO353_01320 0.51 +1.6 286,605 + AO353_01320 0.51 +0.7 286,606 - AO353_01320 0.51 +1.2 286,606 - AO353_01320 0.51 -1.2 286,606 - AO353_01320 0.51 -1.9 286,606 - AO353_01320 0.51 +2.0 286,606 - AO353_01320 0.51 +0.4 286,606 - AO353_01320 0.51 +1.2 286,674 + AO353_01320 0.57 +0.5 286,674 + AO353_01320 0.57 -1.6 286,674 + AO353_01320 0.57 +1.2 286,674 + AO353_01320 0.57 -0.1 286,674 + AO353_01320 0.57 -0.4 286,674 + AO353_01320 0.57 +0.5 286,674 + AO353_01320 0.57 -1.1 286,674 + AO353_01320 0.57 -2.1 286,674 + AO353_01320 0.57 -0.7 286,674 + AO353_01320 0.57 -0.3 286,674 + AO353_01320 0.57 -0.7 286,674 + AO353_01320 0.57 -1.3 286,674 + AO353_01320 0.57 -2.4 286,674 + AO353_01320 0.57 +0.6 286,674 + AO353_01320 0.57 +2.5 286,674 + AO353_01320 0.57 -0.9 286,674 + AO353_01320 0.57 +2.9 286,674 + AO353_01320 0.57 -0.7 286,674 + AO353_01320 0.57 +2.3 286,674 + AO353_01320 0.57 +0.6 286,674 + AO353_01320 0.57 -2.6 286,674 + AO353_01320 0.57 +0.6 286,674 + AO353_01320 0.57 +0.2 286,674 + AO353_01320 0.57 -0.6 286,674 + AO353_01320 0.57 +1.7 286,674 + AO353_01320 0.57 -1.6 286,674 + AO353_01320 0.57 +1.3 286,674 + AO353_01320 0.57 +0.3 286,675 - AO353_01320 0.57 -2.4 286,675 - AO353_01320 0.57 -0.1 286,675 - AO353_01320 0.57 +0.1 286,675 - AO353_01320 0.57 +1.2 286,675 - AO353_01320 0.57 -1.2 286,675 - AO353_01320 0.57 +1.6 286,675 - AO353_01320 0.57 -0.7 286,675 - AO353_01320 0.57 -0.1 286,675 - AO353_01320 0.57 +0.3 286,675 - AO353_01320 0.57 -0.4 286,675 - AO353_01320 0.57 -1.4 286,675 - AO353_01320 0.57 +1.4 286,675 - AO353_01320 0.57 +0.9 286,675 - AO353_01320 0.57 +0.7 286,675 - AO353_01320 0.57 -0.4 286,675 - AO353_01320 0.57 -0.9 286,675 - AO353_01320 0.57 +1.6 286,675 - AO353_01320 0.57 +0.4 286,675 - AO353_01320 0.57 +0.9 286,675 - AO353_01320 0.57 +0.4 286,675 - AO353_01320 0.57 -0.2 286,675 - AO353_01320 0.57 -0.9 286,675 - AO353_01320 0.57 +0.0 286,675 - AO353_01320 0.57 +1.3 286,678 + AO353_01320 0.58 +1.6 286,678 + AO353_01320 0.58 +1.2 286,678 + AO353_01320 0.58 -1.3 286,678 + AO353_01320 0.58 -0.0 286,678 + AO353_01320 0.58 -1.2 286,679 - AO353_01320 0.58 -0.8 286,679 - AO353_01320 0.58 -0.1 286,679 - AO353_01320 0.58 +0.9 286,749 + AO353_01320 0.64 -0.2 286,749 + AO353_01320 0.64 +0.5 286,750 - AO353_01320 0.64 -0.3 286,750 - AO353_01320 0.64 +1.1 286,942 + AO353_01320 0.81 +1.5
Or see this region's nucleotide sequence