Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01125 and AO353_01130 are separated by 291 nucleotides AO353_01130 and AO353_01135 are separated by 308 nucleotides AO353_01135 and AO353_01140 are separated by 214 nucleotides
AO353_01125: AO353_01125 - hypothetical protein, at 249,438 to 250,121
_01125
AO353_01130: AO353_01130 - tRNA-Ser, at 250,413 to 250,502
_01130
AO353_01135: AO353_01135 - enoyl-CoA hydratase, at 250,811 to 251,500
_01135
AO353_01140: AO353_01140 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 251,715 to 252,437
_01140
Position (kb) 250
251
252 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 249.863 kb on + strand, within AO353_01125 at 249.882 kb on + strand, within AO353_01125 at 249.882 kb on + strand, within AO353_01125 at 249.882 kb on + strand, within AO353_01125 at 249.882 kb on + strand, within AO353_01125 at 249.883 kb on - strand, within AO353_01125 at 249.883 kb on - strand, within AO353_01125 at 249.943 kb on - strand, within AO353_01125 at 249.999 kb on + strand, within AO353_01125 at 249.999 kb on + strand, within AO353_01125 at 249.999 kb on + strand, within AO353_01125 at 249.999 kb on + strand, within AO353_01125 at 250.000 kb on - strand, within AO353_01125 at 250.000 kb on - strand, within AO353_01125 at 250.000 kb on - strand, within AO353_01125 at 250.000 kb on - strand, within AO353_01125 at 250.058 kb on + strand at 250.059 kb on - strand at 250.059 kb on - strand at 250.059 kb on - strand at 250.059 kb on - strand at 250.095 kb on + strand at 250.096 kb on - strand at 250.160 kb on + strand at 250.160 kb on + strand at 250.160 kb on + strand at 250.161 kb on - strand at 250.161 kb on - strand at 250.161 kb on - strand at 250.161 kb on - strand at 250.164 kb on + strand at 250.164 kb on + strand at 250.164 kb on + strand at 250.164 kb on + strand at 250.164 kb on + strand at 250.165 kb on - strand at 250.165 kb on - strand at 250.165 kb on - strand at 250.165 kb on - strand at 250.165 kb on - strand at 250.198 kb on - strand at 250.255 kb on + strand at 250.256 kb on - strand at 250.295 kb on + strand at 250.308 kb on - strand at 250.308 kb on - strand at 250.669 kb on + strand at 250.669 kb on + strand at 250.669 kb on + strand at 250.669 kb on + strand at 250.669 kb on + strand at 250.669 kb on + strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.670 kb on - strand at 250.671 kb on + strand at 250.671 kb on + strand at 250.672 kb on - strand at 250.672 kb on - strand at 250.672 kb on - strand at 250.673 kb on + strand at 250.673 kb on + strand at 250.673 kb on + strand at 250.673 kb on + strand at 250.673 kb on + strand at 250.673 kb on + strand at 250.674 kb on - strand at 250.674 kb on - strand at 250.674 kb on - strand at 250.674 kb on - strand at 250.674 kb on - strand at 250.674 kb on - strand at 250.674 kb on - strand at 250.690 kb on + strand at 250.690 kb on + strand at 250.691 kb on - strand at 250.694 kb on + strand at 250.694 kb on + strand at 250.694 kb on + strand at 250.694 kb on + strand at 250.694 kb on + strand at 250.695 kb on - strand at 250.695 kb on - strand at 250.695 kb on - strand at 250.695 kb on - strand at 250.695 kb on - strand at 250.754 kb on + strand at 250.755 kb on - strand at 250.763 kb on + strand at 250.764 kb on - strand at 250.795 kb on + strand at 250.795 kb on + strand at 250.795 kb on + strand at 250.795 kb on + strand at 250.795 kb on + strand at 250.796 kb on - strand at 250.796 kb on - strand at 250.796 kb on - strand at 250.796 kb on - strand at 250.796 kb on - strand at 250.796 kb on - strand at 250.796 kb on - strand at 250.796 kb on - strand at 250.796 kb on - strand at 250.804 kb on + strand at 250.805 kb on - strand at 250.829 kb on + strand at 250.829 kb on + strand at 250.913 kb on - strand, within AO353_01135 at 250.913 kb on - strand, within AO353_01135 at 250.913 kb on - strand, within AO353_01135 at 251.020 kb on + strand, within AO353_01135 at 251.436 kb on + strand at 251.436 kb on + strand at 251.436 kb on + strand at 251.437 kb on - strand at 251.437 kb on - strand at 251.437 kb on - strand at 251.499 kb on - strand at 251.513 kb on + strand at 251.513 kb on + strand at 251.513 kb on + strand at 251.514 kb on - strand at 251.564 kb on + strand at 251.564 kb on + strand at 251.565 kb on - strand at 251.583 kb on + strand at 251.583 kb on + strand at 251.583 kb on + strand at 251.622 kb on - strand at 251.622 kb on - strand at 251.622 kb on - strand at 251.639 kb on + strand at 251.639 kb on + strand at 251.639 kb on + strand at 251.639 kb on + strand at 251.640 kb on - strand at 251.640 kb on - strand at 251.645 kb on + strand at 251.646 kb on - strand at 251.646 kb on - strand at 251.646 kb on - strand at 251.647 kb on + strand at 251.648 kb on - strand at 251.648 kb on - strand at 251.648 kb on - strand at 251.679 kb on + strand at 251.680 kb on - strand at 251.680 kb on - strand at 251.712 kb on + strand at 251.712 kb on + strand at 251.712 kb on + strand at 251.712 kb on + strand at 251.712 kb on + strand at 251.712 kb on + strand at 251.712 kb on + strand at 251.712 kb on + strand at 251.713 kb on - strand at 251.713 kb on - strand at 251.713 kb on - strand at 251.721 kb on + strand at 251.721 kb on + strand at 251.722 kb on - strand at 251.738 kb on - strand at 251.738 kb on - strand at 251.738 kb on - strand at 251.839 kb on - strand, within AO353_01140 at 251.839 kb on - strand, within AO353_01140 at 251.839 kb on - strand, within AO353_01140 at 251.839 kb on - strand, within AO353_01140 at 251.858 kb on + strand, within AO353_01140 at 251.858 kb on + strand, within AO353_01140 at 251.859 kb on - strand, within AO353_01140 at 251.859 kb on - strand, within AO353_01140 at 251.859 kb on - strand, within AO353_01140 at 251.859 kb on - strand, within AO353_01140 at 251.923 kb on + strand, within AO353_01140 at 251.946 kb on + strand, within AO353_01140 at 251.946 kb on + strand, within AO353_01140 at 251.946 kb on + strand, within AO353_01140 at 251.946 kb on + strand, within AO353_01140 at 251.946 kb on + strand, within AO353_01140 at 251.946 kb on + strand, within AO353_01140 at 251.946 kb on + strand, within AO353_01140 at 251.946 kb on + strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 251.947 kb on - strand, within AO353_01140 at 252.261 kb on + strand, within AO353_01140 at 252.261 kb on + strand, within AO353_01140 at 252.261 kb on + strand, within AO353_01140 at 252.261 kb on + strand, within AO353_01140 at 252.261 kb on + strand, within AO353_01140 at 252.262 kb on - strand, within AO353_01140 at 252.262 kb on - strand, within AO353_01140 at 252.262 kb on - strand, within AO353_01140 at 252.262 kb on - strand, within AO353_01140 at 252.262 kb on - strand, within AO353_01140 at 252.272 kb on + strand, within AO353_01140 at 252.272 kb on + strand, within AO353_01140 at 252.273 kb on - strand, within AO353_01140 at 252.273 kb on - strand, within AO353_01140 at 252.273 kb on - strand, within AO353_01140 at 252.273 kb on - strand, within AO353_01140 at 252.332 kb on + strand, within AO353_01140 at 252.333 kb on - strand, within AO353_01140
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM remove 249,863 + AO353_01125 0.62 +1.4 249,882 + AO353_01125 0.65 +1.3 249,882 + AO353_01125 0.65 -0.1 249,882 + AO353_01125 0.65 -0.4 249,882 + AO353_01125 0.65 +0.4 249,883 - AO353_01125 0.65 +0.3 249,883 - AO353_01125 0.65 -0.0 249,943 - AO353_01125 0.74 +1.6 249,999 + AO353_01125 0.82 -0.9 249,999 + AO353_01125 0.82 -2.8 249,999 + AO353_01125 0.82 -0.1 249,999 + AO353_01125 0.82 -0.7 250,000 - AO353_01125 0.82 -1.1 250,000 - AO353_01125 0.82 +1.1 250,000 - AO353_01125 0.82 +0.3 250,000 - AO353_01125 0.82 -0.4 250,058 + +0.5 250,059 - +0.7 250,059 - -0.7 250,059 - -0.3 250,059 - -0.6 250,095 + -0.4 250,096 - +1.3 250,160 + +0.1 250,160 + +0.3 250,160 + +0.2 250,161 - -0.7 250,161 - -0.1 250,161 - +0.9 250,161 - -1.4 250,164 + -0.7 250,164 + +2.9 250,164 + -0.3 250,164 + +0.9 250,164 + -0.9 250,165 - +1.2 250,165 - +1.0 250,165 - +1.7 250,165 - -0.5 250,165 - -1.1 250,198 - -2.1 250,255 + +2.2 250,256 - -0.7 250,295 + +0.3 250,308 - -0.9 250,308 - -1.5 250,669 + +0.9 250,669 + -0.1 250,669 + -0.7 250,669 + +0.0 250,669 + +0.7 250,669 + -0.7 250,670 - -0.9 250,670 - -0.9 250,670 - -2.3 250,670 - +0.5 250,670 - -1.1 250,670 - +0.4 250,670 - +0.2 250,670 - -2.3 250,670 - +3.2 250,670 - -0.9 250,670 - -0.1 250,671 + -2.0 250,671 + +1.1 250,672 - -0.5 250,672 - +1.3 250,672 - +1.1 250,673 + +0.9 250,673 + +0.1 250,673 + -1.8 250,673 + +1.9 250,673 + +0.1 250,673 + -0.1 250,674 - +0.7 250,674 - +0.3 250,674 - -0.4 250,674 - -1.6 250,674 - +0.2 250,674 - -0.7 250,674 - +0.9 250,690 + -0.1 250,690 + +0.1 250,691 - -0.3 250,694 + -0.1 250,694 + -0.6 250,694 + -0.7 250,694 + +1.8 250,694 + +1.0 250,695 - +0.2 250,695 - -1.6 250,695 - +0.5 250,695 - +0.4 250,695 - -0.1 250,754 + +3.7 250,755 - -0.6 250,763 + -0.0 250,764 - +1.9 250,795 + -0.1 250,795 + +1.2 250,795 + -1.4 250,795 + -0.1 250,795 + -0.1 250,796 - +0.4 250,796 - +0.9 250,796 - -0.1 250,796 - -0.7 250,796 - -0.4 250,796 - +0.3 250,796 - -0.7 250,796 - -0.4 250,796 - +0.1 250,804 + +0.3 250,805 - +1.6 250,829 + -0.7 250,829 + -1.1 250,913 - AO353_01135 0.15 -0.7 250,913 - AO353_01135 0.15 -0.9 250,913 - AO353_01135 0.15 +0.3 251,020 + AO353_01135 0.30 +2.9 251,436 + +0.5 251,436 + +0.1 251,436 + -0.1 251,437 - +0.1 251,437 - +1.0 251,437 - -0.7 251,499 - -0.5 251,513 + -0.5 251,513 + -0.7 251,513 + +0.9 251,514 - -2.1 251,564 + +1.2 251,564 + -0.1 251,565 - +0.5 251,583 + -0.1 251,583 + +0.4 251,583 + +0.3 251,622 - +1.0 251,622 - -0.2 251,622 - -2.1 251,639 + -0.1 251,639 + +3.7 251,639 + +1.6 251,639 + -1.1 251,640 - +0.4 251,640 - +0.3 251,645 + -0.7 251,646 - -1.1 251,646 - +0.9 251,646 - -0.1 251,647 + -0.5 251,648 - +0.1 251,648 - -0.1 251,648 - -0.1 251,679 + +0.9 251,680 - +0.7 251,680 - +0.0 251,712 + +0.1 251,712 + +0.9 251,712 + +0.9 251,712 + +0.5 251,712 + -1.1 251,712 + -1.1 251,712 + -1.3 251,712 + +0.5 251,713 - +0.3 251,713 - +0.3 251,713 - -1.7 251,721 + +0.2 251,721 + +1.5 251,722 - -1.4 251,738 - +0.7 251,738 - -0.3 251,738 - -1.6 251,839 - AO353_01140 0.17 +0.9 251,839 - AO353_01140 0.17 +1.2 251,839 - AO353_01140 0.17 +0.0 251,839 - AO353_01140 0.17 -1.1 251,858 + AO353_01140 0.20 -0.3 251,858 + AO353_01140 0.20 +1.3 251,859 - AO353_01140 0.20 +0.7 251,859 - AO353_01140 0.20 -0.3 251,859 - AO353_01140 0.20 +0.1 251,859 - AO353_01140 0.20 +1.0 251,923 + AO353_01140 0.29 +0.0 251,946 + AO353_01140 0.32 +2.5 251,946 + AO353_01140 0.32 +1.1 251,946 + AO353_01140 0.32 +0.6 251,946 + AO353_01140 0.32 +0.3 251,946 + AO353_01140 0.32 -0.7 251,946 + AO353_01140 0.32 +0.7 251,946 + AO353_01140 0.32 -0.3 251,946 + AO353_01140 0.32 -0.7 251,947 - AO353_01140 0.32 -0.8 251,947 - AO353_01140 0.32 -0.4 251,947 - AO353_01140 0.32 -0.9 251,947 - AO353_01140 0.32 +0.2 251,947 - AO353_01140 0.32 +1.0 251,947 - AO353_01140 0.32 +0.9 251,947 - AO353_01140 0.32 -0.3 251,947 - AO353_01140 0.32 -0.2 251,947 - AO353_01140 0.32 +3.9 251,947 - AO353_01140 0.32 -1.1 251,947 - AO353_01140 0.32 -0.1 251,947 - AO353_01140 0.32 +0.6 252,261 + AO353_01140 0.76 +0.8 252,261 + AO353_01140 0.76 +1.5 252,261 + AO353_01140 0.76 -0.1 252,261 + AO353_01140 0.76 -0.7 252,261 + AO353_01140 0.76 -0.6 252,262 - AO353_01140 0.76 +0.3 252,262 - AO353_01140 0.76 -3.1 252,262 - AO353_01140 0.76 +0.9 252,262 - AO353_01140 0.76 -0.7 252,262 - AO353_01140 0.76 +0.6 252,272 + AO353_01140 0.77 +0.6 252,272 + AO353_01140 0.77 -1.3 252,273 - AO353_01140 0.77 +0.5 252,273 - AO353_01140 0.77 -0.9 252,273 - AO353_01140 0.77 -0.2 252,273 - AO353_01140 0.77 +0.9 252,332 + AO353_01140 0.85 -0.3 252,333 - AO353_01140 0.85 -0.1
Or see this region's nucleotide sequence