Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4083

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4082 and Shewana3_4083 are separated by 81 nucleotidesShewana3_4083 and Shewana3_4084 are separated by 24 nucleotidesShewana3_4084 and Shewana3_4085 are separated by 61 nucleotides Shewana3_4082: Shewana3_4082 - molybdenum cofactor biosynthesis protein A (RefSeq), at 4,905,075 to 4,906,058 _4082 Shewana3_4083: Shewana3_4083 - hypothetical protein (RefSeq), at 4,906,140 to 4,906,595 _4083 Shewana3_4084: Shewana3_4084 - formamidopyrimidine-DNA glycosylase (RefSeq), at 4,906,620 to 4,907,435 _4084 Shewana3_4085: Shewana3_4085 - glycosyl transferase family protein (RefSeq), at 4,907,497 to 4,909,221 _4085 Position (kb) 4906 4907Strain fitness (log2 ratio) -2 -1 0 1at 4905.378 kb on - strand, within Shewana3_4082at 4905.536 kb on - strand, within Shewana3_4082at 4905.676 kb on - strand, within Shewana3_4082at 4905.694 kb on + strand, within Shewana3_4082at 4905.778 kb on - strand, within Shewana3_4082at 4905.778 kb on - strand, within Shewana3_4082at 4905.778 kb on - strand, within Shewana3_4082at 4905.852 kb on - strand, within Shewana3_4082at 4905.953 kb on + strand, within Shewana3_4082at 4905.953 kb on + strand, within Shewana3_4082at 4905.961 kb on - strandat 4905.961 kb on - strandat 4905.988 kb on + strandat 4905.996 kb on - strandat 4905.996 kb on - strandat 4905.996 kb on - strandat 4905.996 kb on - strandat 4906.150 kb on + strandat 4906.275 kb on - strand, within Shewana3_4083at 4906.308 kb on - strand, within Shewana3_4083at 4906.355 kb on - strand, within Shewana3_4083at 4906.375 kb on - strand, within Shewana3_4083at 4906.384 kb on + strand, within Shewana3_4083at 4906.391 kb on - strand, within Shewana3_4083at 4906.392 kb on - strand, within Shewana3_4083at 4906.392 kb on - strand, within Shewana3_4083at 4906.392 kb on - strand, within Shewana3_4083at 4906.513 kb on - strand, within Shewana3_4083at 4906.686 kb on + strandat 4906.703 kb on + strand, within Shewana3_4084at 4906.726 kb on - strand, within Shewana3_4084at 4906.726 kb on - strand, within Shewana3_4084at 4906.728 kb on + strand, within Shewana3_4084at 4906.817 kb on + strand, within Shewana3_4084at 4906.878 kb on + strand, within Shewana3_4084at 4906.900 kb on + strand, within Shewana3_4084at 4907.040 kb on - strand, within Shewana3_4084at 4907.148 kb on - strand, within Shewana3_4084at 4907.168 kb on - strand, within Shewana3_4084at 4907.256 kb on - strand, within Shewana3_4084at 4907.348 kb on + strand, within Shewana3_4084at 4907.358 kb on - strandat 4907.567 kb on + strandat 4907.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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4,905,378 - Shewana3_4082 0.31 -0.2
4,905,536 - Shewana3_4082 0.47 -0.4
4,905,676 - Shewana3_4082 0.61 -0.2
4,905,694 + Shewana3_4082 0.63 -0.2
4,905,778 - Shewana3_4082 0.71 +0.1
4,905,778 - Shewana3_4082 0.71 -0.3
4,905,778 - Shewana3_4082 0.71 -0.2
4,905,852 - Shewana3_4082 0.79 -0.1
4,905,953 + Shewana3_4082 0.89 +0.3
4,905,953 + Shewana3_4082 0.89 -2.2
4,905,961 - -0.6
4,905,961 - -0.3
4,905,988 + -1.5
4,905,996 - -0.4
4,905,996 - -0.2
4,905,996 - -0.1
4,905,996 - +0.2
4,906,150 + +1.7
4,906,275 - Shewana3_4083 0.30 +1.1
4,906,308 - Shewana3_4083 0.37 +1.2
4,906,355 - Shewana3_4083 0.47 +1.0
4,906,375 - Shewana3_4083 0.52 +0.9
4,906,384 + Shewana3_4083 0.54 +1.5
4,906,391 - Shewana3_4083 0.55 +1.3
4,906,392 - Shewana3_4083 0.55 +1.2
4,906,392 - Shewana3_4083 0.55 +0.3
4,906,392 - Shewana3_4083 0.55 +1.5
4,906,513 - Shewana3_4083 0.82 +1.1
4,906,686 + -0.3
4,906,703 + Shewana3_4084 0.10 -0.2
4,906,726 - Shewana3_4084 0.13 +0.7
4,906,726 - Shewana3_4084 0.13 -0.3
4,906,728 + Shewana3_4084 0.13 -0.2
4,906,817 + Shewana3_4084 0.24 +0.1
4,906,878 + Shewana3_4084 0.32 -0.3
4,906,900 + Shewana3_4084 0.34 -0.3
4,907,040 - Shewana3_4084 0.51 -0.5
4,907,148 - Shewana3_4084 0.65 +0.1
4,907,168 - Shewana3_4084 0.67 +1.3
4,907,256 - Shewana3_4084 0.78 +0.4
4,907,348 + Shewana3_4084 0.89 -0.2
4,907,358 - +0.5
4,907,567 + +1.0
4,907,582 - +0.1

Or see this region's nucleotide sequence