Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3585 and Shewana3_3586 are separated by 450 nucleotides Shewana3_3586 and Shewana3_3587 overlap by 26 nucleotides
Shewana3_3585: Shewana3_3585 - hypothetical protein (RefSeq), at 4,302,470 to 4,303,843
_3585
Shewana3_3586: Shewana3_3586 - DNA-binding transcriptional regulator YidZ (RefSeq), at 4,304,294 to 4,305,259
_3586
Shewana3_3587: Shewana3_3587 - multidrug efflux system protein MdtL (RefSeq), at 4,305,234 to 4,306,424
_3587
Position (kb) 4304
4305
4306 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4303.342 kb on - strand, within Shewana3_3585 at 4303.390 kb on + strand, within Shewana3_3585 at 4303.457 kb on - strand, within Shewana3_3585 at 4303.610 kb on - strand, within Shewana3_3585 at 4303.621 kb on + strand, within Shewana3_3585 at 4304.199 kb on - strand at 4304.238 kb on + strand at 4304.452 kb on - strand, within Shewana3_3586 at 4304.540 kb on - strand, within Shewana3_3586 at 4304.566 kb on - strand, within Shewana3_3586 at 4304.566 kb on - strand at 4304.596 kb on + strand, within Shewana3_3586 at 4304.724 kb on - strand, within Shewana3_3586 at 4304.988 kb on + strand, within Shewana3_3586 at 4304.994 kb on + strand, within Shewana3_3586 at 4305.000 kb on + strand, within Shewana3_3586 at 4305.177 kb on + strand at 4305.297 kb on - strand at 4305.410 kb on - strand, within Shewana3_3587 at 4305.549 kb on + strand, within Shewana3_3587 at 4305.667 kb on + strand, within Shewana3_3587 at 4305.718 kb on + strand, within Shewana3_3587 at 4305.718 kb on + strand, within Shewana3_3587 at 4305.726 kb on - strand, within Shewana3_3587 at 4305.726 kb on - strand, within Shewana3_3587 at 4305.760 kb on - strand, within Shewana3_3587 at 4305.760 kb on - strand, within Shewana3_3587 at 4305.760 kb on - strand, within Shewana3_3587 at 4305.762 kb on + strand, within Shewana3_3587 at 4305.787 kb on - strand, within Shewana3_3587 at 4305.891 kb on - strand, within Shewana3_3587 at 4306.015 kb on - strand, within Shewana3_3587 at 4306.024 kb on + strand, within Shewana3_3587 at 4306.051 kb on - strand, within Shewana3_3587 at 4306.202 kb on - strand, within Shewana3_3587 at 4306.202 kb on - strand, within Shewana3_3587 at 4306.209 kb on - strand, within Shewana3_3587
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 4,303,342 - Shewana3_3585 0.63 +0.0 4,303,390 + Shewana3_3585 0.67 +1.5 4,303,457 - Shewana3_3585 0.72 +0.1 4,303,610 - Shewana3_3585 0.83 +0.1 4,303,621 + Shewana3_3585 0.84 +1.1 4,304,199 - -0.4 4,304,238 + -0.2 4,304,452 - Shewana3_3586 0.16 -0.5 4,304,540 - Shewana3_3586 0.25 -0.1 4,304,566 - Shewana3_3586 0.28 -0.5 4,304,566 - +0.1 4,304,596 + Shewana3_3586 0.31 -0.5 4,304,724 - Shewana3_3586 0.45 -2.8 4,304,988 + Shewana3_3586 0.72 +0.9 4,304,994 + Shewana3_3586 0.72 -0.6 4,305,000 + Shewana3_3586 0.73 -1.9 4,305,177 + +2.1 4,305,297 - +0.4 4,305,410 - Shewana3_3587 0.15 -0.5 4,305,549 + Shewana3_3587 0.26 +1.1 4,305,667 + Shewana3_3587 0.36 -0.5 4,305,718 + Shewana3_3587 0.41 +1.1 4,305,718 + Shewana3_3587 0.41 +1.5 4,305,726 - Shewana3_3587 0.41 -0.9 4,305,726 - Shewana3_3587 0.41 -0.2 4,305,760 - Shewana3_3587 0.44 -0.3 4,305,760 - Shewana3_3587 0.44 -0.1 4,305,760 - Shewana3_3587 0.44 +0.2 4,305,762 + Shewana3_3587 0.44 +0.5 4,305,787 - Shewana3_3587 0.46 -0.1 4,305,891 - Shewana3_3587 0.55 +0.4 4,306,015 - Shewana3_3587 0.66 -0.0 4,306,024 + Shewana3_3587 0.66 -1.4 4,306,051 - Shewana3_3587 0.69 -0.0 4,306,202 - Shewana3_3587 0.81 -0.1 4,306,202 - Shewana3_3587 0.81 -0.4 4,306,209 - Shewana3_3587 0.82 -0.0
Or see this region's nucleotide sequence