Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2710

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2709 and Shewana3_2710 are separated by 167 nucleotidesShewana3_2710 and Shewana3_2711 are separated by 472 nucleotidesShewana3_2711 and Shewana3_2712 are separated by 26 nucleotides Shewana3_2709: Shewana3_2709 - hypothetical protein (RefSeq), at 3,237,925 to 3,239,454 _2709 Shewana3_2710: Shewana3_2710 - integral membrane protein TerC (RefSeq), at 3,239,622 to 3,240,599 _2710 Shewana3_2711: Shewana3_2711 - hypothetical protein (RefSeq), at 3,241,072 to 3,241,356 _2711 Shewana3_2712: Shewana3_2712 - 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq), at 3,241,383 to 3,242,567 _2712 Position (kb) 3239 3240 3241Strain fitness (log2 ratio) -1 0 1at 3238.716 kb on - strand, within Shewana3_2709at 3238.847 kb on + strand, within Shewana3_2709at 3238.852 kb on + strand, within Shewana3_2709at 3239.005 kb on - strand, within Shewana3_2709at 3239.256 kb on - strand, within Shewana3_2709at 3239.333 kb on + strandat 3239.481 kb on + strandat 3239.735 kb on - strand, within Shewana3_2710at 3239.999 kb on - strand, within Shewana3_2710at 3240.112 kb on - strand, within Shewana3_2710at 3240.261 kb on + strand, within Shewana3_2710at 3240.281 kb on - strand, within Shewana3_2710at 3240.294 kb on + strand, within Shewana3_2710at 3240.505 kb on + strandat 3240.674 kb on + strandat 3240.733 kb on + strandat 3240.793 kb on + strandat 3240.881 kb on - strandat 3240.942 kb on + strandat 3240.942 kb on + strandat 3240.942 kb on + strandat 3240.950 kb on - strandat 3241.197 kb on + strand, within Shewana3_2711at 3241.289 kb on + strand, within Shewana3_2711at 3241.393 kb on + strandat 3241.424 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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3,238,716 - Shewana3_2709 0.52 -0.1
3,238,847 + Shewana3_2709 0.60 +0.7
3,238,852 + Shewana3_2709 0.61 +0.7
3,239,005 - Shewana3_2709 0.71 -0.3
3,239,256 - Shewana3_2709 0.87 +0.7
3,239,333 + +0.7
3,239,481 + -1.6
3,239,735 - Shewana3_2710 0.12 -1.2
3,239,999 - Shewana3_2710 0.39 -0.3
3,240,112 - Shewana3_2710 0.50 -1.1
3,240,261 + Shewana3_2710 0.65 +0.7
3,240,281 - Shewana3_2710 0.67 -0.9
3,240,294 + Shewana3_2710 0.69 +1.1
3,240,505 + +0.7
3,240,674 + -0.3
3,240,733 + +0.7
3,240,793 + -0.3
3,240,881 - +0.1
3,240,942 + -0.8
3,240,942 + -0.3
3,240,942 + -0.3
3,240,950 - -0.3
3,241,197 + Shewana3_2711 0.44 +0.7
3,241,289 + Shewana3_2711 0.76 +0.7
3,241,393 + +1.7
3,241,424 + -0.9

Or see this region's nucleotide sequence