Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2318

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2318 and def are separated by 210 nucleotidesdef and Shewana3_2320 are separated by 192 nucleotides Shewana3_2318: Shewana3_2318 - hypothetical protein (RefSeq), at 2,791,094 to 2,791,942 _2318 Shewana3_2319: def - peptide deformylase (RefSeq), at 2,792,153 to 2,792,644 def Shewana3_2320: Shewana3_2320 - methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq), at 2,792,837 to 2,793,295 _2320 Position (kb) 2791 2792Strain fitness (log2 ratio) -1 0 1 2 3at 2790.117 kb on - strandat 2790.167 kb on - strandat 2790.465 kb on - strandat 2790.469 kb on + strandat 2790.504 kb on - strandat 2790.538 kb on + strandat 2790.834 kb on - strandat 2790.915 kb on + strandat 2790.967 kb on - strandat 2790.977 kb on - strandat 2791.006 kb on + strandat 2791.429 kb on - strand, within Shewana3_2318at 2791.577 kb on + strand, within Shewana3_2318at 2791.814 kb on - strand, within Shewana3_2318at 2792.300 kb on - strand, within defat 2792.306 kb on + strand, within defat 2792.903 kb on - strand, within Shewana3_2320at 2792.913 kb on - strand, within Shewana3_2320

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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2,790,117 - +0.3
2,790,167 - -0.3
2,790,465 - +0.4
2,790,469 + -1.0
2,790,504 - +0.4
2,790,538 + -1.4
2,790,834 - +2.9
2,790,915 + +0.6
2,790,967 - +0.6
2,790,977 - +0.6
2,791,006 + +0.6
2,791,429 - Shewana3_2318 0.39 +0.6
2,791,577 + Shewana3_2318 0.57 -1.4
2,791,814 - Shewana3_2318 0.85 +0.0
2,792,300 - def Shewana3_2319 0.30 -0.1
2,792,306 + def Shewana3_2319 0.31 +0.6
2,792,903 - Shewana3_2320 0.14 -1.4
2,792,913 - Shewana3_2320 0.17 +1.6

Or see this region's nucleotide sequence