Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2257 and Shewana3_2258 are separated by 72 nucleotides Shewana3_2258 and Shewana3_2259 are separated by 142 nucleotides Shewana3_2259 and Shewana3_2260 are separated by 87 nucleotides
Shewana3_2257: Shewana3_2257 - phosphoenolpyruvate--protein phosphotransferase (RefSeq), at 2,718,641 to 2,720,344
_2257
Shewana3_2258: Shewana3_2258 - glucose-specific PTS system component (RefSeq), at 2,720,417 to 2,720,926
_2258
Shewana3_2259: Shewana3_2259 - hypothetical protein (RefSeq), at 2,721,069 to 2,721,431
_2259
Shewana3_2260: Shewana3_2260 - hypothetical protein (RefSeq), at 2,721,519 to 2,722,034
_2260
Position (kb)
2720
2721 Strain fitness (log2 ratio)
-1
0
1 at 2719.476 kb on + strand, within Shewana3_2257 at 2719.546 kb on + strand, within Shewana3_2257 at 2719.551 kb on + strand, within Shewana3_2257 at 2719.554 kb on - strand, within Shewana3_2257 at 2719.652 kb on + strand, within Shewana3_2257 at 2719.713 kb on + strand, within Shewana3_2257 at 2719.900 kb on - strand, within Shewana3_2257 at 2720.063 kb on - strand, within Shewana3_2257 at 2720.107 kb on + strand, within Shewana3_2257 at 2720.307 kb on - strand at 2720.323 kb on + strand at 2720.323 kb on + strand at 2720.365 kb on + strand at 2720.769 kb on + strand, within Shewana3_2258 at 2721.000 kb on - strand at 2721.017 kb on - strand at 2721.147 kb on - strand, within Shewana3_2259 at 2721.476 kb on + strand at 2721.766 kb on - strand, within Shewana3_2260
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 2,719,476 + Shewana3_2257 0.49 -0.4 2,719,546 + Shewana3_2257 0.53 -0.4 2,719,551 + Shewana3_2257 0.53 +0.6 2,719,554 - Shewana3_2257 0.54 +0.6 2,719,652 + Shewana3_2257 0.59 +1.3 2,719,713 + Shewana3_2257 0.63 +0.6 2,719,900 - Shewana3_2257 0.74 +0.0 2,720,063 - Shewana3_2257 0.83 +0.6 2,720,107 + Shewana3_2257 0.86 -0.4 2,720,307 - +0.6 2,720,323 + +0.6 2,720,323 + -1.7 2,720,365 + +0.6 2,720,769 + Shewana3_2258 0.69 +0.6 2,721,000 - -0.4 2,721,017 - -0.4 2,721,147 - Shewana3_2259 0.21 +1.0 2,721,476 + +0.6 2,721,766 - Shewana3_2260 0.48 +0.6
Or see this region's nucleotide sequence