Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2196 and Shewana3_2197 are separated by 202 nucleotides Shewana3_2197 and Shewana3_2198 are separated by 340 nucleotides
Shewana3_2196: Shewana3_2196 - PepSY-associated TM helix domain-containing protein (RefSeq), at 2,635,685 to 2,636,854
_2196
Shewana3_2197: Shewana3_2197 - beta-lactamase domain-containing protein (RefSeq), at 2,637,057 to 2,637,953
_2197
Shewana3_2198: Shewana3_2198 - hypothetical protein (RefSeq), at 2,638,294 to 2,639,196
_2198
Position (kb)
2637
2638 Strain fitness (log2 ratio)
-2
-1
0
1 at 2636.227 kb on + strand, within Shewana3_2196 at 2636.311 kb on - strand, within Shewana3_2196 at 2636.328 kb on - strand, within Shewana3_2196 at 2636.563 kb on + strand, within Shewana3_2196 at 2636.632 kb on + strand, within Shewana3_2196 at 2636.808 kb on + strand at 2636.891 kb on + strand at 2637.132 kb on - strand at 2637.199 kb on - strand, within Shewana3_2197 at 2637.208 kb on + strand, within Shewana3_2197 at 2637.216 kb on - strand, within Shewana3_2197 at 2637.345 kb on - strand, within Shewana3_2197 at 2637.460 kb on - strand, within Shewana3_2197 at 2637.496 kb on + strand, within Shewana3_2197 at 2638.065 kb on - strand at 2638.268 kb on - strand at 2638.284 kb on - strand at 2638.361 kb on - strand at 2638.633 kb on + strand, within Shewana3_2198 at 2638.641 kb on - strand, within Shewana3_2198 at 2638.706 kb on + strand, within Shewana3_2198 at 2638.783 kb on + strand, within Shewana3_2198
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 2,636,227 + Shewana3_2196 0.46 +0.6 2,636,311 - Shewana3_2196 0.54 +0.6 2,636,328 - Shewana3_2196 0.55 +1.6 2,636,563 + Shewana3_2196 0.75 +0.6 2,636,632 + Shewana3_2196 0.81 +0.6 2,636,808 + +0.6 2,636,891 + +0.6 2,637,132 - -0.4 2,637,199 - Shewana3_2197 0.16 -0.4 2,637,208 + Shewana3_2197 0.17 -0.4 2,637,216 - Shewana3_2197 0.18 +0.6 2,637,345 - Shewana3_2197 0.32 -2.0 2,637,460 - Shewana3_2197 0.45 +0.6 2,637,496 + Shewana3_2197 0.49 +0.6 2,638,065 - +0.6 2,638,268 - +0.6 2,638,284 - +0.6 2,638,361 - +0.6 2,638,633 + Shewana3_2198 0.38 +0.6 2,638,641 - Shewana3_2198 0.38 +0.6 2,638,706 + Shewana3_2198 0.46 +0.6 2,638,783 + Shewana3_2198 0.54 +0.6
Or see this region's nucleotide sequence