Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2133

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2132 and Shewana3_2133 are separated by 277 nucleotidesShewana3_2133 and Shewana3_2134 are separated by 118 nucleotides Shewana3_2132: Shewana3_2132 - succinylglutamate desuccinylase (RefSeq), at 2,557,823 to 2,558,857 _2132 Shewana3_2133: Shewana3_2133 - peptide methionine sulfoxide reductase (RefSeq), at 2,559,135 to 2,559,614 _2133 Shewana3_2134: Shewana3_2134 - phosphoglucomutase (RefSeq), at 2,559,733 to 2,561,385 _2134 Position (kb) 2559 2560Strain fitness (log2 ratio) -2 -1 0 1at 2558.169 kb on + strand, within Shewana3_2132at 2558.177 kb on - strand, within Shewana3_2132at 2558.213 kb on - strand, within Shewana3_2132at 2558.318 kb on - strand, within Shewana3_2132at 2558.472 kb on + strand, within Shewana3_2132at 2558.534 kb on + strand, within Shewana3_2132at 2558.694 kb on + strand, within Shewana3_2132at 2558.803 kb on - strandat 2559.042 kb on + strandat 2559.210 kb on + strand, within Shewana3_2133at 2559.506 kb on - strand, within Shewana3_2133at 2559.561 kb on + strand, within Shewana3_2133

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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2,558,169 + Shewana3_2132 0.33 +0.7
2,558,177 - Shewana3_2132 0.34 -1.9
2,558,213 - Shewana3_2132 0.38 +0.2
2,558,318 - Shewana3_2132 0.48 +0.7
2,558,472 + Shewana3_2132 0.63 +0.7
2,558,534 + Shewana3_2132 0.69 +0.7
2,558,694 + Shewana3_2132 0.84 -0.3
2,558,803 - +0.7
2,559,042 + +1.7
2,559,210 + Shewana3_2133 0.16 +1.6
2,559,506 - Shewana3_2133 0.77 +0.7
2,559,561 + Shewana3_2133 0.89 +0.3

Or see this region's nucleotide sequence