Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1364

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1363 and Shewana3_1364 overlap by 8 nucleotidesShewana3_1364 and Shewana3_1365 are separated by 64 nucleotidesShewana3_1365 and Shewana3_1366 overlap by 17 nucleotides Shewana3_1363: Shewana3_1363 - chemotaxis-specific methylesterase (RefSeq), at 1,576,442 to 1,577,566 _1363 Shewana3_1364: Shewana3_1364 - hypothetical protein (RefSeq), at 1,577,559 to 1,578,095 _1364 Shewana3_1365: Shewana3_1365 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,578,160 to 1,578,951 _1365 Shewana3_1366: Shewana3_1366 - CheW protein (RefSeq), at 1,578,935 to 1,579,942 _1366 Position (kb) 1577 1578 1579Strain fitness (log2 ratio) -1 0 1 2at 1576.754 kb on + strand, within Shewana3_1363at 1576.831 kb on - strand, within Shewana3_1363at 1576.912 kb on - strand, within Shewana3_1363at 1577.296 kb on + strand, within Shewana3_1363at 1577.377 kb on + strand, within Shewana3_1363at 1577.557 kb on - strandat 1577.704 kb on - strand, within Shewana3_1364at 1577.836 kb on + strand, within Shewana3_1364at 1577.844 kb on - strand, within Shewana3_1364at 1578.064 kb on + strandat 1578.107 kb on + strandat 1578.254 kb on - strand, within Shewana3_1365at 1578.293 kb on + strand, within Shewana3_1365at 1578.402 kb on - strand, within Shewana3_1365at 1578.453 kb on + strand, within Shewana3_1365at 1578.485 kb on + strand, within Shewana3_1365at 1578.600 kb on - strand, within Shewana3_1365at 1578.804 kb on + strand, within Shewana3_1365at 1578.809 kb on - strand, within Shewana3_1365at 1578.814 kb on - strand, within Shewana3_1365at 1578.997 kb on + strandat 1579.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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1,576,754 + Shewana3_1363 0.28 +2.7
1,576,831 - Shewana3_1363 0.35 +0.7
1,576,912 - Shewana3_1363 0.42 +0.7
1,577,296 + Shewana3_1363 0.76 +2.4
1,577,377 + Shewana3_1363 0.83 +2.5
1,577,557 - +0.7
1,577,704 - Shewana3_1364 0.27 -0.3
1,577,836 + Shewana3_1364 0.52 -0.5
1,577,844 - Shewana3_1364 0.53 +1.1
1,578,064 + -0.5
1,578,107 + +0.4
1,578,254 - Shewana3_1365 0.12 +0.7
1,578,293 + Shewana3_1365 0.17 +0.3
1,578,402 - Shewana3_1365 0.31 +0.7
1,578,453 + Shewana3_1365 0.37 +0.5
1,578,485 + Shewana3_1365 0.41 +0.2
1,578,600 - Shewana3_1365 0.56 +1.7
1,578,804 + Shewana3_1365 0.81 +0.4
1,578,809 - Shewana3_1365 0.82 +1.1
1,578,814 - Shewana3_1365 0.83 +1.7
1,578,997 + +0.2
1,579,004 + -0.0

Or see this region's nucleotide sequence