Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1332 and Shewana3_1333 are separated by 257 nucleotides Shewana3_1333 and Shewana3_1334 are separated by 130 nucleotides Shewana3_1334 and Shewana3_1335 are separated by 44 nucleotides
Shewana3_1332: Shewana3_1332 - flagellin domain-containing protein (RefSeq), at 1,545,522 to 1,546,343
_1332
Shewana3_1333: Shewana3_1333 - flagellin domain-containing protein (RefSeq), at 1,546,601 to 1,547,413
_1333
Shewana3_1334: Shewana3_1334 - flagellar protein FlaG protein (RefSeq), at 1,547,544 to 1,547,930
_1334
Shewana3_1335: Shewana3_1335 - flagellar hook-associated 2 domain-containing protein (RefSeq), at 1,547,975 to 1,549,345
_1335
Position (kb)
1546
1547
1548 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1545.601 kb on + strand at 1545.629 kb on + strand, within Shewana3_1332 at 1545.700 kb on + strand, within Shewana3_1332 at 1545.700 kb on + strand, within Shewana3_1332 at 1545.713 kb on - strand, within Shewana3_1332 at 1546.130 kb on - strand, within Shewana3_1332 at 1546.221 kb on + strand, within Shewana3_1332 at 1546.244 kb on - strand, within Shewana3_1332 at 1546.548 kb on + strand at 1546.556 kb on - strand at 1546.680 kb on + strand at 1546.734 kb on - strand, within Shewana3_1333 at 1546.798 kb on - strand, within Shewana3_1333 at 1546.889 kb on - strand, within Shewana3_1333 at 1546.916 kb on + strand, within Shewana3_1333 at 1547.038 kb on - strand, within Shewana3_1333 at 1547.053 kb on + strand, within Shewana3_1333 at 1547.060 kb on + strand, within Shewana3_1333 at 1547.068 kb on - strand, within Shewana3_1333 at 1547.138 kb on + strand, within Shewana3_1333 at 1547.273 kb on - strand, within Shewana3_1333 at 1547.674 kb on + strand, within Shewana3_1334 at 1547.674 kb on + strand, within Shewana3_1334 at 1547.674 kb on + strand, within Shewana3_1334 at 1547.682 kb on - strand, within Shewana3_1334 at 1547.694 kb on - strand, within Shewana3_1334 at 1547.830 kb on - strand, within Shewana3_1334 at 1547.848 kb on + strand, within Shewana3_1334 at 1547.868 kb on + strand, within Shewana3_1334
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 1,545,601 + -0.2 1,545,629 + Shewana3_1332 0.13 +0.2 1,545,700 + Shewana3_1332 0.22 +0.0 1,545,700 + Shewana3_1332 0.22 +0.3 1,545,713 - Shewana3_1332 0.23 +0.7 1,546,130 - Shewana3_1332 0.74 -0.3 1,546,221 + Shewana3_1332 0.85 +0.2 1,546,244 - Shewana3_1332 0.88 -0.6 1,546,548 + +3.0 1,546,556 - +2.9 1,546,680 + +3.2 1,546,734 - Shewana3_1333 0.16 +0.7 1,546,798 - Shewana3_1333 0.24 +0.7 1,546,889 - Shewana3_1333 0.35 -1.3 1,546,916 + Shewana3_1333 0.39 +3.2 1,547,038 - Shewana3_1333 0.54 +1.1 1,547,053 + Shewana3_1333 0.56 +1.9 1,547,060 + Shewana3_1333 0.56 +1.5 1,547,068 - Shewana3_1333 0.57 -1.3 1,547,138 + Shewana3_1333 0.66 +3.1 1,547,273 - Shewana3_1333 0.83 +0.7 1,547,674 + Shewana3_1334 0.34 -0.2 1,547,674 + Shewana3_1334 0.34 +0.3 1,547,674 + Shewana3_1334 0.34 -0.4 1,547,682 - Shewana3_1334 0.36 -0.3 1,547,694 - Shewana3_1334 0.39 +0.1 1,547,830 - Shewana3_1334 0.74 +0.7 1,547,848 + Shewana3_1334 0.79 -0.2 1,547,868 + Shewana3_1334 0.84 -0.3
Or see this region's nucleotide sequence