Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1186 and Shewana3_1187 are separated by 622 nucleotides Shewana3_1187 and Shewana3_1188 are separated by 152 nucleotides
Shewana3_1186: Shewana3_1186 - LysR family transcriptional regulator (RefSeq), at 1,393,260 to 1,394,201
_1186
Shewana3_1187: Shewana3_1187 - hypothetical protein (RefSeq), at 1,394,824 to 1,396,671
_1187
Shewana3_1188: Shewana3_1188 - putative oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 1,396,824 to 1,397,981
_1188
Position (kb)
1394
1395
1396
1397 Strain fitness (log2 ratio)
-1
0
1
2 at 1393.924 kb on - strand, within Shewana3_1186 at 1394.028 kb on - strand, within Shewana3_1186 at 1394.101 kb on + strand, within Shewana3_1186 at 1394.614 kb on + strand at 1394.876 kb on + strand at 1394.876 kb on + strand at 1394.884 kb on - strand at 1395.093 kb on - strand, within Shewana3_1187 at 1395.185 kb on + strand, within Shewana3_1187 at 1395.200 kb on - strand, within Shewana3_1187 at 1395.338 kb on - strand, within Shewana3_1187 at 1395.355 kb on - strand, within Shewana3_1187 at 1395.392 kb on + strand, within Shewana3_1187 at 1395.462 kb on - strand, within Shewana3_1187 at 1395.510 kb on + strand, within Shewana3_1187 at 1395.572 kb on - strand, within Shewana3_1187 at 1396.003 kb on + strand, within Shewana3_1187 at 1396.003 kb on + strand, within Shewana3_1187 at 1396.442 kb on + strand, within Shewana3_1187 at 1396.461 kb on + strand, within Shewana3_1187 at 1396.543 kb on + strand at 1396.575 kb on - strand at 1397.100 kb on - strand, within Shewana3_1188 at 1397.100 kb on - strand, within Shewana3_1188 at 1397.588 kb on + strand, within Shewana3_1188 at 1397.650 kb on - strand, within Shewana3_1188
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 1,393,924 - Shewana3_1186 0.70 +1.3 1,394,028 - Shewana3_1186 0.82 +0.8 1,394,101 + Shewana3_1186 0.89 +0.1 1,394,614 + -0.4 1,394,876 + +0.8 1,394,876 + -0.7 1,394,884 - -0.2 1,395,093 - Shewana3_1187 0.15 +0.2 1,395,185 + Shewana3_1187 0.20 -0.1 1,395,200 - Shewana3_1187 0.20 -0.5 1,395,338 - Shewana3_1187 0.28 -1.5 1,395,355 - Shewana3_1187 0.29 +0.1 1,395,392 + Shewana3_1187 0.31 -0.1 1,395,462 - Shewana3_1187 0.35 -1.0 1,395,510 + Shewana3_1187 0.37 +0.8 1,395,572 - Shewana3_1187 0.40 +1.2 1,396,003 + Shewana3_1187 0.64 +0.3 1,396,003 + Shewana3_1187 0.64 -1.2 1,396,442 + Shewana3_1187 0.88 +1.8 1,396,461 + Shewana3_1187 0.89 -0.8 1,396,543 + +0.8 1,396,575 - +0.3 1,397,100 - Shewana3_1188 0.24 +0.6 1,397,100 - Shewana3_1188 0.24 -0.4 1,397,588 + Shewana3_1188 0.66 +0.8 1,397,650 - Shewana3_1188 0.71 +0.8
Or see this region's nucleotide sequence