Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1145

Experiment: Anaero. fumarate as e acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1144 and Shewana3_1145 are separated by 106 nucleotidesShewana3_1145 and Shewana3_1146 are separated by 129 nucleotidesShewana3_1146 and Shewana3_1147 are separated by 99 nucleotides Shewana3_1144: Shewana3_1144 - peptidase S41 (RefSeq), at 1,349,390 to 1,352,671 _1144 Shewana3_1145: Shewana3_1145 - hypothetical protein (RefSeq), at 1,352,778 to 1,353,200 _1145 Shewana3_1146: Shewana3_1146 - OsmC family protein (RefSeq), at 1,353,330 to 1,353,767 _1146 Shewana3_1147: Shewana3_1147 - hypothetical protein (RefSeq), at 1,353,867 to 1,354,217 _1147 Position (kb) 1352 1353 1354Strain fitness (log2 ratio) -1 0 1 2at 1351.790 kb on + strand, within Shewana3_1144at 1351.790 kb on + strand, within Shewana3_1144at 1351.862 kb on + strand, within Shewana3_1144at 1352.052 kb on - strand, within Shewana3_1144at 1352.052 kb on - strand, within Shewana3_1144at 1352.420 kb on + strandat 1352.493 kb on + strandat 1352.521 kb on - strandat 1352.700 kb on + strandat 1352.835 kb on - strand, within Shewana3_1145at 1352.835 kb on - strand, within Shewana3_1145at 1352.869 kb on + strand, within Shewana3_1145at 1352.941 kb on + strand, within Shewana3_1145at 1352.983 kb on + strand, within Shewana3_1145at 1353.509 kb on + strand, within Shewana3_1146at 1353.581 kb on - strand, within Shewana3_1146at 1353.797 kb on - strandat 1353.841 kb on + strandat 1353.892 kb on + strandat 1353.897 kb on + strandat 1354.022 kb on - strand, within Shewana3_1147at 1354.165 kb on - strand, within Shewana3_1147

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
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1,351,790 + Shewana3_1144 0.73 -0.1
1,351,790 + Shewana3_1144 0.73 -0.5
1,351,862 + Shewana3_1144 0.75 -0.0
1,352,052 - Shewana3_1144 0.81 +0.7
1,352,052 - Shewana3_1144 0.81 +1.0
1,352,420 + +0.0
1,352,493 + +0.4
1,352,521 - +1.8
1,352,700 + -0.3
1,352,835 - Shewana3_1145 0.13 +1.4
1,352,835 - Shewana3_1145 0.13 +1.0
1,352,869 + Shewana3_1145 0.22 +0.5
1,352,941 + Shewana3_1145 0.39 +0.4
1,352,983 + Shewana3_1145 0.48 -1.5
1,353,509 + Shewana3_1146 0.41 +1.3
1,353,581 - Shewana3_1146 0.57 +0.0
1,353,797 - -1.0
1,353,841 + +0.8
1,353,892 + -0.2
1,353,897 + +0.8
1,354,022 - Shewana3_1147 0.44 -0.1
1,354,165 - Shewana3_1147 0.85 +0.5

Or see this region's nucleotide sequence