Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0896

Experiment: Anaero. fumarate as e acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0895 and Shewana3_0896 are separated by 297 nucleotidesShewana3_0896 and Shewana3_0897 are separated by 62 nucleotides Shewana3_0895: Shewana3_0895 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,042,753 to 1,044,645 _0895 Shewana3_0896: Shewana3_0896 - no description, at 1,044,943 to 1,046,468 _0896 Shewana3_0897: Shewana3_0897 - aminopeptidase N (RefSeq), at 1,046,531 to 1,049,164 _0897 Position (kb) 1044 1045 1046 1047Strain fitness (log2 ratio) -2 -1 0 1at 1043.948 kb on - strand, within Shewana3_0895at 1043.982 kb on + strand, within Shewana3_0895at 1044.059 kb on - strand, within Shewana3_0895at 1044.136 kb on - strand, within Shewana3_0895at 1044.228 kb on - strand, within Shewana3_0895at 1044.477 kb on + strandat 1044.479 kb on + strandat 1044.505 kb on - strandat 1044.608 kb on + strandat 1044.608 kb on + strandat 1044.673 kb on + strandat 1044.679 kb on + strandat 1044.681 kb on - strandat 1045.120 kb on - strand, within Shewana3_0896at 1045.121 kb on + strand, within Shewana3_0896at 1045.412 kb on + strand, within Shewana3_0896at 1045.420 kb on - strand, within Shewana3_0896at 1046.559 kb on + strandat 1046.593 kb on + strandat 1046.601 kb on - strandat 1046.601 kb on - strandat 1046.668 kb on - strandat 1046.733 kb on + strandat 1047.022 kb on - strand, within Shewana3_0897at 1047.255 kb on - strand, within Shewana3_0897at 1047.355 kb on - strand, within Shewana3_0897at 1047.373 kb on + strand, within Shewana3_0897at 1047.373 kb on + strand, within Shewana3_0897at 1047.381 kb on - strand, within Shewana3_0897at 1047.391 kb on + strand, within Shewana3_0897at 1047.391 kb on + strand, within Shewana3_0897at 1047.391 kb on + strand, within Shewana3_0897at 1047.462 kb on + strand, within Shewana3_0897

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor
remove
1,043,948 - Shewana3_0895 0.63 -0.4
1,043,982 + Shewana3_0895 0.65 -2.1
1,044,059 - Shewana3_0895 0.69 -0.6
1,044,136 - Shewana3_0895 0.73 -1.0
1,044,228 - Shewana3_0895 0.78 +1.0
1,044,477 + +0.7
1,044,479 + +0.2
1,044,505 - +0.4
1,044,608 + -0.4
1,044,608 + +0.5
1,044,673 + +0.1
1,044,679 + -0.4
1,044,681 - -0.0
1,045,120 - Shewana3_0896 0.12 +1.0
1,045,121 + Shewana3_0896 0.12 -0.0
1,045,412 + Shewana3_0896 0.31 +0.5
1,045,420 - Shewana3_0896 0.31 -0.0
1,046,559 + -2.2
1,046,593 + -0.1
1,046,601 - -0.4
1,046,601 - -0.3
1,046,668 - +0.0
1,046,733 + +0.3
1,047,022 - Shewana3_0897 0.19 +0.0
1,047,255 - Shewana3_0897 0.27 +0.3
1,047,355 - Shewana3_0897 0.31 +0.7
1,047,373 + Shewana3_0897 0.32 -0.0
1,047,373 + Shewana3_0897 0.32 -0.9
1,047,381 - Shewana3_0897 0.32 +0.9
1,047,391 + Shewana3_0897 0.33 +0.2
1,047,391 + Shewana3_0897 0.33 -0.1
1,047,391 + Shewana3_0897 0.33 -0.8
1,047,462 + Shewana3_0897 0.35 +0.3

Or see this region's nucleotide sequence