Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0847 and Shewana3_0848 are separated by 170 nucleotides Shewana3_0848 and Shewana3_0849 are separated by 177 nucleotides
Shewana3_0847: Shewana3_0847 - potassium/proton antiporter (RefSeq), at 983,483 to 985,207
_0847
Shewana3_0848: Shewana3_0848 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase (RefSeq), at 985,378 to 986,229
_0848
Shewana3_0849: Shewana3_0849 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 986,407 to 987,837
_0849
Position (kb) 985
986
987 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 984.395 kb on + strand, within Shewana3_0847 at 984.599 kb on + strand, within Shewana3_0847 at 984.644 kb on - strand, within Shewana3_0847 at 984.678 kb on - strand, within Shewana3_0847 at 984.909 kb on + strand, within Shewana3_0847 at 985.042 kb on - strand at 985.216 kb on + strand at 985.216 kb on + strand at 985.224 kb on - strand at 985.224 kb on - strand at 986.400 kb on - strand at 986.450 kb on - strand at 986.531 kb on + strand at 986.550 kb on - strand, within Shewana3_0849 at 986.550 kb on - strand, within Shewana3_0849 at 986.617 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.785 kb on + strand, within Shewana3_0849 at 986.829 kb on - strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.848 kb on - strand, within Shewana3_0849 at 986.969 kb on + strand, within Shewana3_0849 at 987.026 kb on + strand, within Shewana3_0849 at 987.086 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.118 kb on + strand, within Shewana3_0849 at 987.119 kb on + strand, within Shewana3_0849 at 987.136 kb on + strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 984,395 + Shewana3_0847 0.53 +1.4 984,599 + Shewana3_0847 0.65 -0.3 984,644 - Shewana3_0847 0.67 -0.3 984,678 - Shewana3_0847 0.69 -1.0 984,909 + Shewana3_0847 0.83 -0.0 985,042 - +0.6 985,216 + -0.1 985,216 + +0.2 985,224 - +0.3 985,224 - -0.5 986,400 - -3.7 986,450 - -2.7 986,531 + -2.8 986,550 - Shewana3_0849 0.10 -1.5 986,550 - Shewana3_0849 0.10 -2.9 986,617 + Shewana3_0849 0.15 -2.6 986,717 + Shewana3_0849 0.22 -1.4 986,717 + Shewana3_0849 0.22 -2.4 986,725 - Shewana3_0849 0.22 -0.6 986,725 - Shewana3_0849 0.22 -3.0 986,785 + Shewana3_0849 0.26 -3.7 986,829 - Shewana3_0849 0.29 -2.7 986,840 + Shewana3_0849 0.30 -2.9 986,840 + Shewana3_0849 0.30 -2.6 986,848 - Shewana3_0849 0.31 -0.0 986,969 + Shewana3_0849 0.39 -3.6 987,026 + Shewana3_0849 0.43 -4.4 987,086 - Shewana3_0849 0.47 -1.4 987,096 - Shewana3_0849 0.48 -1.5 987,096 - Shewana3_0849 0.48 +1.0 987,112 + Shewana3_0849 0.49 -1.4 987,112 + Shewana3_0849 0.49 -2.3 987,118 + Shewana3_0849 0.50 -1.2 987,119 + Shewana3_0849 0.50 -4.0 987,136 + Shewana3_0849 0.51 -3.3 987,172 - Shewana3_0849 0.53 -1.1 987,172 - Shewana3_0849 0.53 -1.0
Or see this region's nucleotide sequence