Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0301 and Shewana3_0302 are separated by 85 nucleotides Shewana3_0302 and Shewana3_0303 are separated by 138 nucleotides Shewana3_0303 and Shewana3_0304 are separated by 44 nucleotides
Shewana3_0301: Shewana3_0301 - GTP-binding protein TypA (RefSeq), at 336,865 to 338,676
_0301
Shewana3_0302: Shewana3_0302 - AraC family transcriptional regulator (RefSeq), at 338,762 to 339,769
_0302
Shewana3_0303: Shewana3_0303 - short-chain dehydrogenase/reductase SDR (RefSeq), at 339,908 to 340,669
_0303
Shewana3_0304: Shewana3_0304 - hypothetical protein (RefSeq), at 340,714 to 341,220
_0304
Position (kb) 338
339
340 Strain fitness (log2 ratio) -1
0
1 at 337.889 kb on + strand, within Shewana3_0301 at 337.890 kb on - strand, within Shewana3_0301 at 337.919 kb on + strand, within Shewana3_0301 at 337.959 kb on - strand, within Shewana3_0301 at 337.969 kb on - strand, within Shewana3_0301 at 338.185 kb on - strand, within Shewana3_0301 at 338.234 kb on - strand, within Shewana3_0301 at 338.251 kb on + strand, within Shewana3_0301 at 338.259 kb on - strand, within Shewana3_0301 at 338.375 kb on - strand, within Shewana3_0301 at 338.557 kb on - strand at 338.567 kb on + strand at 338.641 kb on + strand at 338.709 kb on - strand at 338.715 kb on + strand at 338.960 kb on + strand, within Shewana3_0302 at 338.960 kb on + strand, within Shewana3_0302 at 338.968 kb on - strand, within Shewana3_0302 at 338.978 kb on - strand, within Shewana3_0302 at 339.008 kb on + strand, within Shewana3_0302 at 339.027 kb on - strand, within Shewana3_0302 at 339.045 kb on + strand, within Shewana3_0302 at 339.182 kb on - strand, within Shewana3_0302 at 339.189 kb on + strand, within Shewana3_0302 at 339.189 kb on + strand, within Shewana3_0302 at 339.206 kb on + strand, within Shewana3_0302 at 339.243 kb on - strand, within Shewana3_0302 at 339.271 kb on - strand, within Shewana3_0302 at 339.381 kb on - strand, within Shewana3_0302 at 339.594 kb on - strand, within Shewana3_0302 at 339.900 kb on + strand at 339.906 kb on - strand at 339.913 kb on - strand at 339.919 kb on + strand at 340.102 kb on + strand, within Shewana3_0303 at 340.297 kb on - strand, within Shewana3_0303 at 340.297 kb on - strand, within Shewana3_0303 at 340.352 kb on - strand, within Shewana3_0303 at 340.424 kb on - strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.470 kb on + strand, within Shewana3_0303 at 340.472 kb on + strand, within Shewana3_0303 at 340.485 kb on + strand, within Shewana3_0303 at 340.523 kb on + strand, within Shewana3_0303 at 340.634 kb on - strand at 340.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 337,889 + Shewana3_0301 0.57 -0.8 337,890 - Shewana3_0301 0.57 -0.8 337,919 + Shewana3_0301 0.58 -1.1 337,959 - Shewana3_0301 0.60 +1.2 337,969 - Shewana3_0301 0.61 -0.3 338,185 - Shewana3_0301 0.73 +1.2 338,234 - Shewana3_0301 0.76 +1.2 338,251 + Shewana3_0301 0.76 -1.0 338,259 - Shewana3_0301 0.77 -0.2 338,375 - Shewana3_0301 0.83 +0.2 338,557 - +0.7 338,567 + -0.8 338,641 + -1.0 338,709 - -0.2 338,715 + +0.1 338,960 + Shewana3_0302 0.20 -0.2 338,960 + Shewana3_0302 0.20 -0.1 338,968 - Shewana3_0302 0.20 -0.2 338,978 - Shewana3_0302 0.21 +0.2 339,008 + Shewana3_0302 0.24 +0.5 339,027 - Shewana3_0302 0.26 -0.0 339,045 + Shewana3_0302 0.28 +0.9 339,182 - Shewana3_0302 0.42 +0.1 339,189 + Shewana3_0302 0.42 -0.7 339,189 + Shewana3_0302 0.42 +1.2 339,206 + Shewana3_0302 0.44 +0.1 339,243 - Shewana3_0302 0.48 +0.2 339,271 - Shewana3_0302 0.50 -0.2 339,381 - Shewana3_0302 0.61 +0.1 339,594 - Shewana3_0302 0.83 +0.0 339,900 + +0.1 339,906 - -0.5 339,913 - +0.1 339,919 + +0.5 340,102 + Shewana3_0303 0.25 +0.5 340,297 - Shewana3_0303 0.51 -0.2 340,297 - Shewana3_0303 0.51 +0.1 340,352 - Shewana3_0303 0.58 -0.1 340,424 - Shewana3_0303 0.68 +0.1 340,470 + Shewana3_0303 0.74 -0.0 340,470 + Shewana3_0303 0.74 -0.4 340,470 + Shewana3_0303 0.74 -0.1 340,470 + Shewana3_0303 0.74 -0.4 340,472 + Shewana3_0303 0.74 -0.0 340,485 + Shewana3_0303 0.76 +0.1 340,523 + Shewana3_0303 0.81 +0.2 340,634 - +0.2 340,680 + -0.4
Or see this region's nucleotide sequence