Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnA and Shewana3_0301 are separated by 985 nucleotides Shewana3_0301 and Shewana3_0302 are separated by 85 nucleotides
Shewana3_0300: glnA - glutamine synthetase (RefSeq), at 334,470 to 335,879
glnA
Shewana3_0301: Shewana3_0301 - GTP-binding protein TypA (RefSeq), at 336,865 to 338,676
_0301
Shewana3_0302: Shewana3_0302 - AraC family transcriptional regulator (RefSeq), at 338,762 to 339,769
_0302
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -2
-1
0
1 at 336.057 kb on - strand at 336.112 kb on - strand at 336.127 kb on + strand at 336.137 kb on - strand at 336.137 kb on - strand at 336.185 kb on - strand at 336.265 kb on + strand at 336.299 kb on + strand at 336.336 kb on + strand at 336.448 kb on + strand at 336.497 kb on - strand at 336.555 kb on + strand at 336.683 kb on + strand at 336.767 kb on + strand at 336.855 kb on + strand at 336.987 kb on + strand at 337.096 kb on - strand, within Shewana3_0301 at 337.131 kb on + strand, within Shewana3_0301 at 337.139 kb on - strand, within Shewana3_0301 at 337.139 kb on - strand, within Shewana3_0301 at 337.139 kb on - strand at 337.223 kb on + strand, within Shewana3_0301 at 337.223 kb on + strand, within Shewana3_0301 at 337.294 kb on + strand, within Shewana3_0301 at 337.547 kb on - strand, within Shewana3_0301 at 337.599 kb on + strand, within Shewana3_0301 at 337.632 kb on - strand, within Shewana3_0301 at 337.632 kb on - strand, within Shewana3_0301 at 337.632 kb on - strand, within Shewana3_0301 at 337.639 kb on + strand, within Shewana3_0301 at 337.647 kb on - strand, within Shewana3_0301 at 337.889 kb on + strand, within Shewana3_0301 at 337.890 kb on - strand, within Shewana3_0301 at 337.919 kb on + strand, within Shewana3_0301 at 337.959 kb on - strand, within Shewana3_0301 at 337.969 kb on - strand, within Shewana3_0301 at 338.185 kb on - strand, within Shewana3_0301 at 338.234 kb on - strand, within Shewana3_0301 at 338.251 kb on + strand, within Shewana3_0301 at 338.259 kb on - strand, within Shewana3_0301 at 338.375 kb on - strand, within Shewana3_0301 at 338.557 kb on - strand at 338.567 kb on + strand at 338.641 kb on + strand at 338.709 kb on - strand at 338.715 kb on + strand at 338.960 kb on + strand, within Shewana3_0302 at 338.960 kb on + strand, within Shewana3_0302 at 338.968 kb on - strand, within Shewana3_0302 at 338.978 kb on - strand, within Shewana3_0302 at 339.008 kb on + strand, within Shewana3_0302 at 339.027 kb on - strand, within Shewana3_0302 at 339.045 kb on + strand, within Shewana3_0302 at 339.182 kb on - strand, within Shewana3_0302 at 339.189 kb on + strand, within Shewana3_0302 at 339.189 kb on + strand, within Shewana3_0302 at 339.206 kb on + strand, within Shewana3_0302 at 339.243 kb on - strand, within Shewana3_0302 at 339.271 kb on - strand, within Shewana3_0302 at 339.381 kb on - strand, within Shewana3_0302 at 339.594 kb on - strand, within Shewana3_0302
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 336,057 - -0.9 336,112 - +0.3 336,127 + +0.4 336,137 - -0.0 336,137 - -0.0 336,185 - +0.4 336,265 + -0.2 336,299 + +0.4 336,336 + +0.2 336,448 + -0.0 336,497 - +0.4 336,555 + +0.4 336,683 + +0.5 336,767 + -0.8 336,855 + -2.5 336,987 + -1.0 337,096 - Shewana3_0301 0.13 -0.6 337,131 + Shewana3_0301 0.15 -0.9 337,139 - Shewana3_0301 0.15 +1.0 337,139 - Shewana3_0301 0.15 -0.3 337,139 - +1.2 337,223 + Shewana3_0301 0.20 -0.8 337,223 + Shewana3_0301 0.20 -1.6 337,294 + Shewana3_0301 0.24 -1.0 337,547 - Shewana3_0301 0.38 +1.2 337,599 + Shewana3_0301 0.41 -0.7 337,632 - Shewana3_0301 0.42 -0.8 337,632 - Shewana3_0301 0.42 +1.2 337,632 - Shewana3_0301 0.42 +1.2 337,639 + Shewana3_0301 0.43 +0.1 337,647 - Shewana3_0301 0.43 +0.2 337,889 + Shewana3_0301 0.57 -0.8 337,890 - Shewana3_0301 0.57 -0.8 337,919 + Shewana3_0301 0.58 -1.1 337,959 - Shewana3_0301 0.60 +1.2 337,969 - Shewana3_0301 0.61 -0.3 338,185 - Shewana3_0301 0.73 +1.2 338,234 - Shewana3_0301 0.76 +1.2 338,251 + Shewana3_0301 0.76 -1.0 338,259 - Shewana3_0301 0.77 -0.2 338,375 - Shewana3_0301 0.83 +0.2 338,557 - +0.7 338,567 + -0.8 338,641 + -1.0 338,709 - -0.2 338,715 + +0.1 338,960 + Shewana3_0302 0.20 -0.2 338,960 + Shewana3_0302 0.20 -0.1 338,968 - Shewana3_0302 0.20 -0.2 338,978 - Shewana3_0302 0.21 +0.2 339,008 + Shewana3_0302 0.24 +0.5 339,027 - Shewana3_0302 0.26 -0.0 339,045 + Shewana3_0302 0.28 +0.9 339,182 - Shewana3_0302 0.42 +0.1 339,189 + Shewana3_0302 0.42 -0.7 339,189 + Shewana3_0302 0.42 +1.2 339,206 + Shewana3_0302 0.44 +0.1 339,243 - Shewana3_0302 0.48 +0.2 339,271 - Shewana3_0302 0.50 -0.2 339,381 - Shewana3_0302 0.61 +0.1 339,594 - Shewana3_0302 0.83 +0.0
Or see this region's nucleotide sequence