Experiment: Anaero. fumarate as e acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0142 and Shewana3_0143 are separated by 459 nucleotides Shewana3_0143 and Shewana3_0144 are separated by 82 nucleotides
Shewana3_0142: Shewana3_0142 - sodium:dicarboxylate symporter (RefSeq), at 163,107 to 164,336
_0142
Shewana3_0143: Shewana3_0143 - hypothetical protein (RefSeq), at 164,796 to 165,149
_0143
Shewana3_0144: Shewana3_0144 - hypothetical protein (RefSeq), at 165,232 to 166,965
_0144
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 163.831 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.842 kb on + strand, within Shewana3_0142 at 163.850 kb on - strand, within Shewana3_0142 at 163.942 kb on - strand, within Shewana3_0142 at 163.958 kb on + strand, within Shewana3_0142 at 163.959 kb on - strand, within Shewana3_0142 at 164.016 kb on + strand, within Shewana3_0142 at 164.138 kb on + strand, within Shewana3_0142 at 164.642 kb on + strand at 164.842 kb on + strand, within Shewana3_0143 at 165.003 kb on - strand, within Shewana3_0143 at 165.080 kb on + strand, within Shewana3_0143 at 165.206 kb on + strand at 165.223 kb on + strand at 165.230 kb on - strand at 165.237 kb on - strand at 165.272 kb on - strand at 165.357 kb on + strand at 165.365 kb on - strand at 165.695 kb on + strand, within Shewana3_0144 at 165.703 kb on + strand, within Shewana3_0144 at 165.733 kb on - strand, within Shewana3_0144 at 165.859 kb on + strand, within Shewana3_0144 at 165.867 kb on - strand, within Shewana3_0144 at 165.957 kb on - strand, within Shewana3_0144 at 166.006 kb on + strand, within Shewana3_0144 at 166.011 kb on + strand, within Shewana3_0144 at 166.090 kb on + strand, within Shewana3_0144 at 166.106 kb on - strand, within Shewana3_0144 at 166.112 kb on + strand, within Shewana3_0144 at 166.112 kb on + strand, within Shewana3_0144 at 166.129 kb on + strand, within Shewana3_0144
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as e acceptor remove 163,831 + Shewana3_0142 0.59 +0.8 163,831 + Shewana3_0142 0.59 -0.9 163,831 + Shewana3_0142 0.59 -0.1 163,839 - Shewana3_0142 0.60 -0.4 163,839 - Shewana3_0142 0.60 -0.3 163,839 - Shewana3_0142 0.60 -0.1 163,842 + Shewana3_0142 0.60 -1.2 163,850 - Shewana3_0142 0.60 -0.3 163,942 - Shewana3_0142 0.68 -0.4 163,958 + Shewana3_0142 0.69 +0.2 163,959 - Shewana3_0142 0.69 -0.0 164,016 + Shewana3_0142 0.74 -0.1 164,138 + Shewana3_0142 0.84 +0.4 164,642 + -0.0 164,842 + Shewana3_0143 0.13 -0.3 165,003 - Shewana3_0143 0.58 -3.1 165,080 + Shewana3_0143 0.80 -0.2 165,206 + +0.3 165,223 + -0.2 165,230 - -0.1 165,237 - -0.1 165,272 - -0.1 165,357 + -0.6 165,365 - +0.1 165,695 + Shewana3_0144 0.27 -0.1 165,703 + Shewana3_0144 0.27 -0.2 165,733 - Shewana3_0144 0.29 +0.3 165,859 + Shewana3_0144 0.36 -0.0 165,867 - Shewana3_0144 0.37 +0.3 165,957 - Shewana3_0144 0.42 -0.1 166,006 + Shewana3_0144 0.45 -0.2 166,011 + Shewana3_0144 0.45 -0.3 166,090 + Shewana3_0144 0.49 -0.2 166,106 - Shewana3_0144 0.50 +0.1 166,112 + Shewana3_0144 0.51 -0.2 166,112 + Shewana3_0144 0.51 +0.3 166,129 + Shewana3_0144 0.52 +0.4
Or see this region's nucleotide sequence