Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_925

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
1,049,329	+				+0.5
1,049,329	+				+0.9
1,049,330	-				+2.1
1,049,330	-				+0.8
1,049,330	-				+1.1
1,049,330	-				-1.2
1,049,330	-				-0.5
1,049,330	-				+0.7
1,049,330	-				+0.8
1,049,449	+		Pf1N1B4_924	0.19	+0.4
1,049,449	+		Pf1N1B4_924	0.19	+2.1
1,049,450	-		Pf1N1B4_924	0.19	+0.1
1,049,486	-		Pf1N1B4_924	0.24	-1.5
1,049,528	+		Pf1N1B4_924	0.29	+0.1
1,049,528	+		Pf1N1B4_924	0.29	-0.9
1,049,528	+		Pf1N1B4_924	0.29	-0.2
1,049,529	-		Pf1N1B4_924	0.29	+0.7
1,049,529	-		Pf1N1B4_924	0.29	+0.1
1,049,529	-		Pf1N1B4_924	0.29	+0.3
1,049,575	+		Pf1N1B4_924	0.35	-0.5
1,049,575	+				+1.7
1,049,575	+		Pf1N1B4_924	0.35	+1.1
1,049,575	+		Pf1N1B4_924	0.35	+0.7
1,049,576	-		Pf1N1B4_924	0.35	+0.7
1,049,576	-		Pf1N1B4_924	0.35	+0.1
1,049,576	-		Pf1N1B4_924	0.35	+0.1
1,049,576	-		Pf1N1B4_924	0.35	+0.7
1,049,576	-		Pf1N1B4_924	0.35	+1.3
1,049,699	-		Pf1N1B4_924	0.51	+1.7
1,049,752	+		Pf1N1B4_924	0.58	-0.8
1,049,752	+		Pf1N1B4_924	0.58	-0.3
1,049,752	+		Pf1N1B4_924	0.58	+0.1
1,049,752	+		Pf1N1B4_924	0.58	-0.3
1,049,752	+				+0.1
1,049,753	-		Pf1N1B4_924	0.58	+1.1
1,049,753	-		Pf1N1B4_924	0.58	-0.9
1,049,753	-				-0.9
1,049,755	+		Pf1N1B4_924	0.58	+0.7
1,049,755	+		Pf1N1B4_924	0.58	-0.9
1,049,756	-		Pf1N1B4_924	0.59	-1.7
1,049,756	-		Pf1N1B4_924	0.59	+0.1
1,049,756	-		Pf1N1B4_924	0.59	+1.1
1,049,756	-		Pf1N1B4_924	0.59	+0.6
1,049,783	+		Pf1N1B4_924	0.62	+1.4
1,049,783	+		Pf1N1B4_924	0.62	-1.5
1,049,885	+		Pf1N1B4_924	0.75	-0.9
1,049,885	+		Pf1N1B4_924	0.75	-0.9
1,049,886	-		Pf1N1B4_924	0.75	-2.2
1,049,886	-		Pf1N1B4_924	0.75	+0.8
1,049,886	-		Pf1N1B4_924	0.75	+0.5
1,049,923	+		Pf1N1B4_924	0.80	-0.1
1,049,924	-		Pf1N1B4_924	0.80	-0.9
1,050,023	+				-0.1
1,050,023	+				+1.1
1,050,023	+				+0.1
1,050,023	+				+0.1
1,050,023	+				+0.4
1,050,024	-				+0.6
1,050,077	+				-0.2
1,050,199	+				+0.0
1,050,243	+				+0.3
1,050,243	+				-0.9
1,050,243	+				+0.5
1,050,416	-				+0.1
1,050,416	-				+2.7
1,050,416	-				+1.2
1,050,429	+				+0.1
1,050,429	+				+0.2
1,050,429	+				+0.5
1,050,429	+				+1.1
1,050,429	+				+1.1
1,050,429	+				+2.7
1,050,429	+				-0.9
1,050,430	-				+0.3
1,050,430	-				+0.1
1,050,430	-				+0.1
1,050,430	-				-0.4
1,050,430	-				+0.1
1,050,531	+		Pf1N1B4_925	0.18	-1.5
1,050,531	+		Pf1N1B4_925	0.18	+1.4
1,050,532	-		Pf1N1B4_925	0.18	+0.5
1,050,532	-				+2.1
1,050,537	+		Pf1N1B4_925	0.19	+0.1
1,050,537	+				+2.1
1,050,537	+		Pf1N1B4_925	0.19	+0.7
1,050,538	-		Pf1N1B4_925	0.19	+2.1
1,050,843	+		Pf1N1B4_925	0.45	+1.7
1,050,876	+		Pf1N1B4_925	0.48	+0.2
1,050,876	+		Pf1N1B4_925	0.48	+0.5
1,050,877	-		Pf1N1B4_925	0.48	+2.4
1,050,880	+				+0.7
1,050,880	+		Pf1N1B4_925	0.48	-0.1
1,050,880	+		Pf1N1B4_925	0.48	+0.8
1,050,880	+		Pf1N1B4_925	0.48	+0.7
1,050,881	-		Pf1N1B4_925	0.48	-0.5
1,050,881	-		Pf1N1B4_925	0.48	+0.7
1,050,881	-				+1.1
1,050,881	-		Pf1N1B4_925	0.48	-0.4
1,050,881	-		Pf1N1B4_925	0.48	+0.1
1,050,881	-		Pf1N1B4_925	0.48	+1.1
1,050,881	-		Pf1N1B4_925	0.48	+2.1
1,050,881	-		Pf1N1B4_925	0.48	-0.1
1,050,881	-		Pf1N1B4_925	0.48	+0.6
1,050,924	+		Pf1N1B4_925	0.52	-1.2
1,050,924	+		Pf1N1B4_925	0.52	+1.1
1,050,925	-		Pf1N1B4_925	0.52	-0.8
1,050,925	-		Pf1N1B4_925	0.52	-0.1
1,050,975	+		Pf1N1B4_925	0.56	-2.9
1,051,071	+		Pf1N1B4_925	0.64	+1.4
1,051,071	+		Pf1N1B4_925	0.64	+0.6
1,051,071	+		Pf1N1B4_925	0.64	+1.8
1,051,071	+		Pf1N1B4_925	0.64	+0.1
1,051,072	-		Pf1N1B4_925	0.64	-0.5
1,051,072	-		Pf1N1B4_925	0.64	+0.1
1,051,072	-		Pf1N1B4_925	0.64	+1.5
1,051,072	-		Pf1N1B4_925	0.64	-1.9
1,051,117	-		Pf1N1B4_925	0.68	+0.4
1,051,199	-		Pf1N1B4_925	0.75	+0.7
1,051,305	+		Pf1N1B4_925	0.84	+0.8
1,051,305	+		Pf1N1B4_925	0.84	-0.2
1,051,305	+		Pf1N1B4_925	0.84	+0.1
1,051,305	+		Pf1N1B4_925	0.84	+0.2
1,051,306	-		Pf1N1B4_925	0.84	+0.1
1,051,306	-		Pf1N1B4_925	0.84	+0.9
1,051,306	-		Pf1N1B4_925	0.84	+2.1
1,051,306	-		Pf1N1B4_925	0.84	+0.7
1,051,313	+		Pf1N1B4_925	0.85	+0.2
1,051,313	+		Pf1N1B4_925	0.85	-0.7
1,051,313	+		Pf1N1B4_925	0.85	+2.3
1,051,313	+				-1.5
1,051,313	+		Pf1N1B4_925	0.85	+0.1
1,051,313	+		Pf1N1B4_925	0.85	+0.7
1,051,313	+		Pf1N1B4_925	0.85	+0.1
1,051,313	+		Pf1N1B4_925	0.85	+0.1
1,051,314	-		Pf1N1B4_925	0.85	-0.6
1,051,314	-		Pf1N1B4_925	0.85	+1.5
1,051,314	-		Pf1N1B4_925	0.85	+1.7
1,051,314	-		Pf1N1B4_925	0.85	+0.1
1,051,314	-		Pf1N1B4_925	0.85	-0.1
1,051,314	-		Pf1N1B4_925	0.85	-1.9
1,051,314	-		Pf1N1B4_925	0.85	+0.9
1,051,314	-		Pf1N1B4_925	0.85	+0.3
1,051,314	-		Pf1N1B4_925	0.85	+0.7
1,051,314	-				+1.7
1,051,314	-		Pf1N1B4_925	0.85	+0.1
1,051,314	-		Pf1N1B4_925	0.85	+0.1
1,051,495	+				-0.1
1,051,496	-				+0.1
1,051,496	-				-0.5
1,051,496	-				-0.7
1,051,496	-				-0.1
1,051,496	-				-0.7
1,051,515	+				-0.5
1,051,515	+				+2.1
1,051,515	+				-2.4
1,051,516	-				+0.8
1,051,516	-				+0.5
1,051,516	-				-0.5
1,051,516	-				-1.7
1,051,516	-				-0.3
1,051,516	-				+0.7
1,051,516	-				+0.1
1,051,535	-				-0.5
1,051,616	+				-0.3
1,051,642	+				+0.1
1,051,642	+				-0.9
1,051,643	-				+2.1
1,051,656	+				+0.1
1,051,656	+				-0.8
1,051,941	-		Pf1N1B4_926	0.19	-0.4
1,051,941	-		Pf1N1B4_926	0.19	+1.1
1,051,941	-		Pf1N1B4_926	0.19	+0.1
1,051,941	-		Pf1N1B4_926	0.19	-1.5
1,052,008	+		Pf1N1B4_926	0.23	-0.7
1,052,243	+		Pf1N1B4_926	0.39	+1.4
1,052,243	+				-0.9
1,052,243	+		Pf1N1B4_926	0.39	+0.5
1,052,243	+		Pf1N1B4_926	0.39	+1.1
1,052,244	-		Pf1N1B4_926	0.39	+1.1
1,052,244	-		Pf1N1B4_926	0.39	+0.1
1,052,244	-		Pf1N1B4_926	0.39	+1.1
1,052,244	-		Pf1N1B4_926	0.39	+1.5