Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5149 and Pf1N1B4_5150 are separated by 2 nucleotides
Pf1N1B4_5149 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 5,732,960 to 5,733,703
_5149
Pf1N1B4_5150 - FIG00933687: hypothetical protein, at 5,733,706 to 5,736,129
_5150
Position (kb) 5733
5734
5735
5736
5737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5732.860 kb on + strand at 5732.886 kb on - strand at 5733.172 kb on + strand, within Pf1N1B4_5149 at 5733.172 kb on + strand, within Pf1N1B4_5149 at 5733.173 kb on - strand, within Pf1N1B4_5149 at 5733.173 kb on - strand, within Pf1N1B4_5149 at 5733.173 kb on - strand, within Pf1N1B4_5149 at 5733.173 kb on - strand at 5733.173 kb on - strand, within Pf1N1B4_5149 at 5733.257 kb on + strand, within Pf1N1B4_5149 at 5733.257 kb on + strand, within Pf1N1B4_5149 at 5733.257 kb on + strand, within Pf1N1B4_5149 at 5733.258 kb on - strand, within Pf1N1B4_5149 at 5733.258 kb on - strand, within Pf1N1B4_5149 at 5733.497 kb on + strand, within Pf1N1B4_5149 at 5733.498 kb on - strand, within Pf1N1B4_5149 at 5733.579 kb on + strand, within Pf1N1B4_5149 at 5734.036 kb on + strand, within Pf1N1B4_5150 at 5734.036 kb on + strand, within Pf1N1B4_5150 at 5734.037 kb on - strand, within Pf1N1B4_5150 at 5734.037 kb on - strand, within Pf1N1B4_5150 at 5734.037 kb on - strand, within Pf1N1B4_5150 at 5734.124 kb on - strand, within Pf1N1B4_5150 at 5734.360 kb on + strand at 5734.694 kb on - strand, within Pf1N1B4_5150 at 5734.930 kb on + strand, within Pf1N1B4_5150 at 5734.930 kb on + strand, within Pf1N1B4_5150 at 5734.930 kb on + strand at 5734.931 kb on - strand, within Pf1N1B4_5150 at 5734.931 kb on - strand, within Pf1N1B4_5150 at 5735.371 kb on + strand, within Pf1N1B4_5150 at 5735.590 kb on + strand at 5735.675 kb on - strand, within Pf1N1B4_5150 at 5735.827 kb on + strand, within Pf1N1B4_5150 at 5735.828 kb on - strand, within Pf1N1B4_5150 at 5736.101 kb on - strand at 5736.101 kb on - strand at 5736.182 kb on - strand at 5736.338 kb on + strand at 5736.339 kb on - strand at 5736.433 kb on + strand at 5736.481 kb on - strand at 5736.524 kb on - strand at 5736.546 kb on + strand at 5736.569 kb on - strand at 5736.921 kb on + strand at 5736.921 kb on + strand at 5736.999 kb on - strand at 5737.003 kb on - strand at 5737.009 kb on - strand at 5737.078 kb on + strand at 5737.127 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 5,732,860 + +2.4 5,732,886 - +0.1 5,733,172 + Pf1N1B4_5149 0.28 +2.4 5,733,172 + Pf1N1B4_5149 0.28 -0.0 5,733,173 - Pf1N1B4_5149 0.29 +1.0 5,733,173 - Pf1N1B4_5149 0.29 -0.6 5,733,173 - Pf1N1B4_5149 0.29 +0.4 5,733,173 - -1.6 5,733,173 - Pf1N1B4_5149 0.29 +0.1 5,733,257 + Pf1N1B4_5149 0.40 +1.3 5,733,257 + Pf1N1B4_5149 0.40 -1.6 5,733,257 + Pf1N1B4_5149 0.40 -2.9 5,733,258 - Pf1N1B4_5149 0.40 -1.1 5,733,258 - Pf1N1B4_5149 0.40 +0.2 5,733,497 + Pf1N1B4_5149 0.72 +1.6 5,733,498 - Pf1N1B4_5149 0.72 +0.1 5,733,579 + Pf1N1B4_5149 0.83 -0.0 5,734,036 + Pf1N1B4_5150 0.14 -1.1 5,734,036 + Pf1N1B4_5150 0.14 -0.8 5,734,037 - Pf1N1B4_5150 0.14 +0.4 5,734,037 - Pf1N1B4_5150 0.14 -0.6 5,734,037 - Pf1N1B4_5150 0.14 -0.4 5,734,124 - Pf1N1B4_5150 0.17 +0.4 5,734,360 + +0.4 5,734,694 - Pf1N1B4_5150 0.41 +0.2 5,734,930 + Pf1N1B4_5150 0.50 -0.6 5,734,930 + Pf1N1B4_5150 0.50 -0.6 5,734,930 + -0.0 5,734,931 - Pf1N1B4_5150 0.51 +1.0 5,734,931 - Pf1N1B4_5150 0.51 -1.2 5,735,371 + Pf1N1B4_5150 0.69 -1.2 5,735,590 + -1.2 5,735,675 - Pf1N1B4_5150 0.81 -0.2 5,735,827 + Pf1N1B4_5150 0.88 -0.9 5,735,828 - Pf1N1B4_5150 0.88 +0.7 5,736,101 - -1.1 5,736,101 - -0.6 5,736,182 - -0.0 5,736,338 + -1.0 5,736,339 - +0.4 5,736,433 + -0.2 5,736,481 - +0.8 5,736,524 - +2.4 5,736,546 + -0.6 5,736,569 - +0.4 5,736,921 + +0.1 5,736,921 + -1.8 5,736,999 - +0.4 5,737,003 - -1.2 5,737,009 - +1.4 5,737,078 + -0.6 5,737,127 + +0.4
Or see this region's nucleotide sequence