Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07775

Experiment: Formate deepwell acetate and vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07770 and MMP_RS07775 are separated by 56 nucleotidesMMP_RS07775 and MMP_RS07780 are separated by 296 nucleotides MMP_RS07770: MMP_RS07770 - alanine racemase, at 1,470,522 to 1,471,643 _RS07770 MMP_RS07775: MMP_RS07775 - alanine dehydrogenase, at 1,471,700 to 1,472,821 _RS07775 MMP_RS07780: MMP_RS07780 - prephenate dehydrogenase, at 1,473,118 to 1,474,458 _RS07780 Position (kb) 1471 1472 1473Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1470.853 kb on + strand, within MMP_RS07770at 1470.853 kb on + strand, within MMP_RS07770at 1470.895 kb on + strand, within MMP_RS07770at 1470.966 kb on - strand, within MMP_RS07770at 1470.967 kb on + strand, within MMP_RS07770at 1470.984 kb on - strand, within MMP_RS07770at 1470.989 kb on - strand, within MMP_RS07770at 1471.117 kb on - strand, within MMP_RS07770at 1471.657 kb on - strandat 1471.658 kb on + strandat 1472.194 kb on - strand, within MMP_RS07775at 1472.300 kb on - strand, within MMP_RS07775at 1472.324 kb on - strand, within MMP_RS07775at 1472.512 kb on - strand, within MMP_RS07775at 1472.513 kb on + strand, within MMP_RS07775at 1472.542 kb on + strand, within MMP_RS07775at 1472.771 kb on + strandat 1472.840 kb on + strandat 1472.876 kb on - strandat 1472.879 kb on - strandat 1472.893 kb on + strandat 1473.010 kb on - strandat 1473.010 kb on - strandat 1473.011 kb on + strandat 1473.021 kb on - strandat 1473.083 kb on - strandat 1473.084 kb on + strandat 1473.087 kb on + strandat 1473.087 kb on + strandat 1473.208 kb on - strandat 1473.236 kb on - strandat 1473.277 kb on - strandat 1473.530 kb on - strandat 1473.535 kb on + strandat 1473.535 kb on + strandat 1473.653 kb on - strandat 1473.772 kb on + strandat 1473.774 kb on - strandat 1473.806 kb on - strandat 1473.807 kb on + strandat 1473.807 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate deepwell acetate and vitamin FREE
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1,470,853 + MMP_RS07770 0.30 +0.2
1,470,853 + MMP_RS07770 0.30 -0.3
1,470,895 + MMP_RS07770 0.33 +0.1
1,470,966 - MMP_RS07770 0.40 +0.4
1,470,967 + MMP_RS07770 0.40 +0.3
1,470,984 - MMP_RS07770 0.41 -0.9
1,470,989 - MMP_RS07770 0.42 -0.1
1,471,117 - MMP_RS07770 0.53 +0.5
1,471,657 - -0.1
1,471,658 + +0.5
1,472,194 - MMP_RS07775 0.44 -1.1
1,472,300 - MMP_RS07775 0.53 -1.0
1,472,324 - MMP_RS07775 0.56 -0.4
1,472,512 - MMP_RS07775 0.72 -0.5
1,472,513 + MMP_RS07775 0.72 -0.2
1,472,542 + MMP_RS07775 0.75 -0.3
1,472,771 + -1.2
1,472,840 + -0.3
1,472,876 - -0.2
1,472,879 - -0.9
1,472,893 + -0.3
1,473,010 - -0.2
1,473,010 - +0.3
1,473,011 + +0.1
1,473,021 - +0.7
1,473,083 - -1.5
1,473,084 + -0.8
1,473,087 + -2.2
1,473,087 + -0.5
1,473,208 - -1.5
1,473,236 - -3.6
1,473,277 - -4.1
1,473,530 - -3.7
1,473,535 + -2.9
1,473,535 + -2.9
1,473,653 - -1.9
1,473,772 + -0.3
1,473,774 - -2.1
1,473,806 - -3.6
1,473,807 + -3.8
1,473,807 + -2.1

Or see this region's nucleotide sequence