Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05075

Experiment: Formate deepwell acetate and vitamin FREE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS05060 and MMP_RS05065 are separated by 4 nucleotidesMMP_RS05065 and MMP_RS05070 are separated by 104 nucleotidesMMP_RS05070 and MMP_RS05075 are separated by 4 nucleotidesMMP_RS05075 and MMP_RS05080 are separated by 13 nucleotides MMP_RS05060: MMP_RS05060 - AAA family ATPase, at 963,269 to 964,051 _RS05060 MMP_RS05065: MMP_RS05065 - CooT family nickel-binding protein, at 964,056 to 964,235 _RS05065 MMP_RS05070: MMP_RS05070 - 4Fe-4S dicluster domain-containing protein, at 964,340 to 964,804 _RS05070 MMP_RS05075: MMP_RS05075 - acetyl-CoA decarbonylase/synthase complex subunit gamma, at 964,809 to 966,182 _RS05075 MMP_RS05080: MMP_RS05080 - acetyl-CoA decarbonylase/synthase complex subunit delta, at 966,196 to 967,350 _RS05080 Position (kb) 964 965 966 967Strain fitness (log2 ratio) -2 -1 0 1at 963.847 kb on + strand, within MMP_RS05060at 963.916 kb on + strand, within MMP_RS05060at 963.919 kb on + strand, within MMP_RS05060at 963.945 kb on - strand, within MMP_RS05060at 963.946 kb on + strand, within MMP_RS05060at 964.013 kb on + strandat 964.060 kb on + strandat 964.075 kb on + strand, within MMP_RS05065at 964.075 kb on + strand, within MMP_RS05065at 964.075 kb on + strand, within MMP_RS05065at 964.138 kb on + strand, within MMP_RS05065at 964.197 kb on - strand, within MMP_RS05065at 964.235 kb on - strandat 964.267 kb on - strandat 964.288 kb on + strandat 964.301 kb on + strandat 964.304 kb on + strandat 964.354 kb on + strandat 964.402 kb on - strand, within MMP_RS05070at 964.421 kb on - strand, within MMP_RS05070at 964.533 kb on + strand, within MMP_RS05070at 964.533 kb on + strand, within MMP_RS05070at 964.537 kb on - strand, within MMP_RS05070at 964.537 kb on - strand, within MMP_RS05070at 964.581 kb on + strand, within MMP_RS05070at 964.581 kb on + strand, within MMP_RS05070at 964.582 kb on - strand, within MMP_RS05070at 964.601 kb on - strand, within MMP_RS05070at 964.751 kb on + strand, within MMP_RS05070at 964.787 kb on - strandat 964.816 kb on + strandat 964.824 kb on - strandat 964.825 kb on + strandat 964.866 kb on + strandat 964.891 kb on + strandat 964.947 kb on - strand, within MMP_RS05075at 965.209 kb on - strand, within MMP_RS05075at 965.252 kb on - strand, within MMP_RS05075at 965.256 kb on - strand, within MMP_RS05075at 965.265 kb on - strand, within MMP_RS05075at 965.439 kb on + strand, within MMP_RS05075at 965.477 kb on + strand, within MMP_RS05075at 965.496 kb on - strand, within MMP_RS05075at 965.496 kb on - strand, within MMP_RS05075at 965.497 kb on + strand, within MMP_RS05075at 965.497 kb on + strand, within MMP_RS05075at 965.598 kb on - strand, within MMP_RS05075at 965.621 kb on - strand, within MMP_RS05075at 965.639 kb on + strand, within MMP_RS05075at 965.790 kb on - strand, within MMP_RS05075at 965.791 kb on + strand, within MMP_RS05075at 965.890 kb on + strand, within MMP_RS05075at 965.890 kb on + strand, within MMP_RS05075at 965.890 kb on + strand, within MMP_RS05075at 965.917 kb on - strand, within MMP_RS05075at 965.918 kb on + strand, within MMP_RS05075at 965.918 kb on + strand, within MMP_RS05075at 965.921 kb on + strand, within MMP_RS05075at 965.936 kb on - strand, within MMP_RS05075at 965.936 kb on - strand, within MMP_RS05075at 965.937 kb on + strand, within MMP_RS05075at 965.938 kb on - strand, within MMP_RS05075at 965.939 kb on + strand, within MMP_RS05075at 965.939 kb on + strand, within MMP_RS05075at 965.940 kb on - strand, within MMP_RS05075at 965.941 kb on + strand, within MMP_RS05075at 965.941 kb on + strand, within MMP_RS05075at 965.941 kb on + strand, within MMP_RS05075at 966.017 kb on - strand, within MMP_RS05075at 966.047 kb on - strandat 966.108 kb on + strandat 966.161 kb on - strandat 966.161 kb on - strandat 966.209 kb on + strandat 966.222 kb on - strandat 966.223 kb on + strandat 966.252 kb on + strandat 966.313 kb on - strand, within MMP_RS05080at 966.313 kb on - strand, within MMP_RS05080at 966.505 kb on - strand, within MMP_RS05080at 966.559 kb on - strand, within MMP_RS05080at 966.559 kb on - strand, within MMP_RS05080at 966.560 kb on + strand, within MMP_RS05080at 966.578 kb on + strand, within MMP_RS05080at 966.591 kb on - strand, within MMP_RS05080at 966.622 kb on - strand, within MMP_RS05080at 966.623 kb on + strand, within MMP_RS05080at 966.623 kb on + strand, within MMP_RS05080at 966.864 kb on - strand, within MMP_RS05080at 966.910 kb on + strand, within MMP_RS05080at 966.964 kb on - strand, within MMP_RS05080at 966.964 kb on - strand, within MMP_RS05080at 966.965 kb on + strand, within MMP_RS05080at 966.965 kb on + strand, within MMP_RS05080at 967.021 kb on - strand, within MMP_RS05080at 967.022 kb on + strand, within MMP_RS05080

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate deepwell acetate and vitamin FREE
remove
963,847 + MMP_RS05060 0.74 -0.6
963,916 + MMP_RS05060 0.83 -1.0
963,919 + MMP_RS05060 0.83 -1.2
963,945 - MMP_RS05060 0.86 -0.3
963,946 + MMP_RS05060 0.86 -1.0
964,013 + -1.0
964,060 + -0.8
964,075 + MMP_RS05065 0.11 -0.4
964,075 + MMP_RS05065 0.11 -1.0
964,075 + MMP_RS05065 0.11 -1.6
964,138 + MMP_RS05065 0.46 -0.9
964,197 - MMP_RS05065 0.78 -1.0
964,235 - -1.3
964,267 - -1.3
964,288 + -0.7
964,301 + -1.3
964,304 + -1.8
964,354 + -0.7
964,402 - MMP_RS05070 0.13 -0.8
964,421 - MMP_RS05070 0.17 -0.7
964,533 + MMP_RS05070 0.42 -1.0
964,533 + MMP_RS05070 0.42 -1.6
964,537 - MMP_RS05070 0.42 -1.4
964,537 - MMP_RS05070 0.42 -1.8
964,581 + MMP_RS05070 0.52 -1.5
964,581 + MMP_RS05070 0.52 -0.7
964,582 - MMP_RS05070 0.52 -0.8
964,601 - MMP_RS05070 0.56 -1.0
964,751 + MMP_RS05070 0.88 -1.6
964,787 - -0.7
964,816 + -1.1
964,824 - -1.3
964,825 + -0.7
964,866 + -2.2
964,891 + -2.0
964,947 - MMP_RS05075 0.10 -1.0
965,209 - MMP_RS05075 0.29 -1.8
965,252 - MMP_RS05075 0.32 -2.2
965,256 - MMP_RS05075 0.33 -2.4
965,265 - MMP_RS05075 0.33 -1.0
965,439 + MMP_RS05075 0.46 -1.5
965,477 + MMP_RS05075 0.49 -0.8
965,496 - MMP_RS05075 0.50 -0.9
965,496 - MMP_RS05075 0.50 -1.7
965,497 + MMP_RS05075 0.50 -1.2
965,497 + MMP_RS05075 0.50 -1.0
965,598 - MMP_RS05075 0.57 -0.9
965,621 - MMP_RS05075 0.59 -1.4
965,639 + MMP_RS05075 0.60 -1.1
965,790 - MMP_RS05075 0.71 -0.5
965,791 + MMP_RS05075 0.71 -1.1
965,890 + MMP_RS05075 0.79 -2.3
965,890 + MMP_RS05075 0.79 -1.1
965,890 + MMP_RS05075 0.79 -1.5
965,917 - MMP_RS05075 0.81 -1.5
965,918 + MMP_RS05075 0.81 -1.5
965,918 + MMP_RS05075 0.81 -1.8
965,921 + MMP_RS05075 0.81 -1.6
965,936 - MMP_RS05075 0.82 -1.3
965,936 - MMP_RS05075 0.82 -1.4
965,937 + MMP_RS05075 0.82 -2.1
965,938 - MMP_RS05075 0.82 -0.5
965,939 + MMP_RS05075 0.82 -1.0
965,939 + MMP_RS05075 0.82 -1.4
965,940 - MMP_RS05075 0.82 -1.5
965,941 + MMP_RS05075 0.82 -2.3
965,941 + MMP_RS05075 0.82 -1.2
965,941 + MMP_RS05075 0.82 -0.5
966,017 - MMP_RS05075 0.88 -0.7
966,047 - -1.9
966,108 + -1.3
966,161 - -1.3
966,161 - -1.9
966,209 + -0.9
966,222 - -1.0
966,223 + -1.1
966,252 + -1.6
966,313 - MMP_RS05080 0.10 -0.9
966,313 - MMP_RS05080 0.10 -1.2
966,505 - MMP_RS05080 0.27 -1.7
966,559 - MMP_RS05080 0.31 -1.3
966,559 - MMP_RS05080 0.31 -0.7
966,560 + MMP_RS05080 0.32 -1.1
966,578 + MMP_RS05080 0.33 -1.2
966,591 - MMP_RS05080 0.34 -1.4
966,622 - MMP_RS05080 0.37 -1.5
966,623 + MMP_RS05080 0.37 -0.8
966,623 + MMP_RS05080 0.37 -1.1
966,864 - MMP_RS05080 0.58 -0.9
966,910 + MMP_RS05080 0.62 -1.2
966,964 - MMP_RS05080 0.66 -1.5
966,964 - MMP_RS05080 0.66 -1.2
966,965 + MMP_RS05080 0.67 -1.0
966,965 + MMP_RS05080 0.67 -1.1
967,021 - MMP_RS05080 0.71 -1.5
967,022 + MMP_RS05080 0.72 -0.9

Or see this region's nucleotide sequence