Experiment: Formate deepwell acetate and vitamin FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03570 and MMP_RS03575 are separated by 164 nucleotides MMP_RS03575 and MMP_RS03580 are separated by 99 nucleotides MMP_RS03580 and MMP_RS03585 are separated by 163 nucleotides MMP_RS03585 and MMP_RS03590 are separated by 121 nucleotides
MMP_RS03570: MMP_RS03570 - uracil-xanthine permease family protein, at 669,125 to 670,366
_RS03570
MMP_RS03575: MMP_RS03575 - ECF transporter S component, at 670,531 to 671,097
_RS03575
MMP_RS03580: MMP_RS03580 - signal recognition particle-docking protein FtsY, at 671,197 to 672,348
_RS03580
MMP_RS03585: MMP_RS03585 - Hsp20/alpha crystallin family protein, at 672,512 to 672,976
_RS03585
MMP_RS03590: MMP_RS03590 - METTL5 family protein, at 673,098 to 673,739
_RS03590
Position (kb) 671
672
673 Strain fitness (log2 ratio) -1
0
1 at 670.334 kb on - strand at 670.335 kb on + strand at 670.350 kb on + strand at 670.350 kb on + strand at 670.350 kb on + strand at 670.356 kb on + strand at 670.392 kb on + strand at 670.437 kb on + strand at 670.440 kb on - strand at 670.466 kb on - strand at 670.536 kb on - strand at 670.558 kb on - strand at 670.559 kb on + strand at 670.583 kb on + strand at 670.598 kb on - strand, within MMP_RS03575 at 670.616 kb on + strand, within MMP_RS03575 at 670.655 kb on - strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.671 kb on - strand, within MMP_RS03575 at 670.683 kb on - strand, within MMP_RS03575 at 670.778 kb on + strand, within MMP_RS03575 at 670.805 kb on + strand, within MMP_RS03575 at 670.874 kb on + strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.981 kb on - strand, within MMP_RS03575 at 671.057 kb on + strand at 671.088 kb on - strand at 671.089 kb on + strand at 671.143 kb on + strand at 671.143 kb on + strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.152 kb on + strand at 671.185 kb on - strand at 671.312 kb on + strand at 671.410 kb on + strand, within MMP_RS03580 at 671.521 kb on - strand, within MMP_RS03580 at 671.606 kb on - strand, within MMP_RS03580 at 671.754 kb on - strand, within MMP_RS03580 at 671.960 kb on + strand, within MMP_RS03580 at 672.061 kb on + strand, within MMP_RS03580 at 672.382 kb on - strand at 672.392 kb on + strand at 672.412 kb on - strand at 672.416 kb on + strand at 672.422 kb on + strand at 672.425 kb on - strand at 672.425 kb on - strand at 672.434 kb on - strand at 672.507 kb on + strand at 672.507 kb on + strand at 672.666 kb on - strand, within MMP_RS03585 at 672.848 kb on - strand, within MMP_RS03585 at 673.000 kb on - strand at 673.028 kb on + strand at 673.050 kb on - strand at 673.052 kb on - strand at 673.096 kb on - strand at 673.274 kb on - strand, within MMP_RS03590 at 673.275 kb on + strand, within MMP_RS03590 at 673.275 kb on + strand, within MMP_RS03590 at 673.277 kb on + strand, within MMP_RS03590
Per-strain Table
Position Strand Gene LocusTag Fraction Formate deepwell acetate and vitamin FREE remove 670,334 - -0.3 670,335 + +0.1 670,350 + +0.4 670,350 + +0.6 670,350 + +0.2 670,356 + +0.8 670,392 + -0.1 670,437 + +0.4 670,440 - +0.0 670,466 - +0.2 670,536 - -0.1 670,558 - +0.5 670,559 + -0.4 670,583 + -0.3 670,598 - MMP_RS03575 0.12 +0.6 670,616 + MMP_RS03575 0.15 +0.1 670,655 - MMP_RS03575 0.22 -0.1 670,656 + MMP_RS03575 0.22 -0.4 670,656 + MMP_RS03575 0.22 -0.6 670,656 + MMP_RS03575 0.22 -0.1 670,671 - MMP_RS03575 0.25 -0.3 670,683 - MMP_RS03575 0.27 +0.2 670,778 + MMP_RS03575 0.44 -0.2 670,805 + MMP_RS03575 0.48 +0.1 670,874 + MMP_RS03575 0.60 +0.6 670,908 - MMP_RS03575 0.66 +0.8 670,908 - MMP_RS03575 0.66 +0.2 670,908 - MMP_RS03575 0.66 +0.1 670,981 - MMP_RS03575 0.79 +0.1 671,057 + -0.3 671,088 - +0.2 671,089 + +0.6 671,143 + -0.0 671,143 + -0.4 671,144 - +0.0 671,144 - -0.2 671,152 + -0.2 671,185 - -0.1 671,312 + -1.1 671,410 + MMP_RS03580 0.18 -1.3 671,521 - MMP_RS03580 0.28 +0.6 671,606 - MMP_RS03580 0.36 -1.6 671,754 - MMP_RS03580 0.48 -1.2 671,960 + MMP_RS03580 0.66 -1.0 672,061 + MMP_RS03580 0.75 -0.8 672,382 - +0.7 672,392 + -0.5 672,412 - +0.2 672,416 + +0.5 672,422 + +0.7 672,425 - +0.4 672,425 - -0.3 672,434 - +0.3 672,507 + -0.6 672,507 + -0.3 672,666 - MMP_RS03585 0.33 -0.1 672,848 - MMP_RS03585 0.72 -0.1 673,000 - -0.0 673,028 + +0.1 673,050 - +0.0 673,052 - -0.9 673,096 - -0.9 673,274 - MMP_RS03590 0.27 -0.4 673,275 + MMP_RS03590 0.28 -0.5 673,275 + MMP_RS03590 0.28 -0.1 673,277 + MMP_RS03590 0.28 -0.6
Or see this region's nucleotide sequence