Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06575 and H281DRAFT_06576 overlap by 8 nucleotides H281DRAFT_06576 and H281DRAFT_06577 overlap by 30 nucleotides H281DRAFT_06577 and H281DRAFT_06578 are separated by 174 nucleotides H281DRAFT_06578 and H281DRAFT_06579 are separated by 99 nucleotides
H281DRAFT_06575: H281DRAFT_06575 - PAS domain S-box-containing protein, at 16,607 to 18,796
_06575
H281DRAFT_06576: H281DRAFT_06576 - CheY chemotaxis protein or a CheY-like REC (receiver) domain, at 18,789 to 19,160
_06576
H281DRAFT_06577: H281DRAFT_06577 - hypothetical protein, at 19,131 to 19,541
_06577
H281DRAFT_06578: H281DRAFT_06578 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 19,716 to 20,573
_06578
H281DRAFT_06579: H281DRAFT_06579 - Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase), at 20,673 to 21,695
_06579
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.788 kb on + strand at 18.789 kb on - strand at 18.933 kb on - strand, within H281DRAFT_06576 at 19.044 kb on + strand, within H281DRAFT_06576 at 19.045 kb on - strand, within H281DRAFT_06576 at 19.045 kb on - strand, within H281DRAFT_06576 at 19.117 kb on + strand at 19.145 kb on + strand at 19.145 kb on + strand at 19.146 kb on - strand at 19.159 kb on - strand at 19.339 kb on + strand, within H281DRAFT_06577 at 19.340 kb on - strand, within H281DRAFT_06577 at 19.340 kb on - strand, within H281DRAFT_06577 at 19.436 kb on - strand, within H281DRAFT_06577 at 19.436 kb on - strand, within H281DRAFT_06577 at 19.483 kb on + strand, within H281DRAFT_06577 at 19.483 kb on + strand, within H281DRAFT_06577 at 19.483 kb on + strand, within H281DRAFT_06577 at 19.484 kb on - strand, within H281DRAFT_06577 at 19.484 kb on - strand, within H281DRAFT_06577 at 19.484 kb on - strand, within H281DRAFT_06577 at 19.542 kb on - strand at 19.638 kb on - strand at 19.721 kb on + strand at 19.721 kb on + strand at 19.722 kb on - strand at 19.758 kb on - strand at 19.983 kb on - strand, within H281DRAFT_06578 at 20.046 kb on + strand, within H281DRAFT_06578 at 20.046 kb on + strand, within H281DRAFT_06578 at 20.047 kb on - strand at 20.297 kb on + strand, within H281DRAFT_06578 at 20.298 kb on - strand, within H281DRAFT_06578 at 20.338 kb on - strand, within H281DRAFT_06578 at 20.511 kb on + strand at 20.511 kb on + strand at 20.512 kb on - strand at 20.512 kb on - strand at 20.512 kb on - strand at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.938 kb on - strand, within H281DRAFT_06579 at 21.040 kb on - strand, within H281DRAFT_06579 at 21.108 kb on + strand, within H281DRAFT_06579 at 21.109 kb on - strand, within H281DRAFT_06579 at 21.109 kb on - strand, within H281DRAFT_06579 at 21.450 kb on + strand, within H281DRAFT_06579 at 21.451 kb on - strand, within H281DRAFT_06579 at 21.528 kb on + strand, within H281DRAFT_06579
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 18,788 + -1.0 18,789 - -0.1 18,933 - H281DRAFT_06576 0.39 +1.1 19,044 + H281DRAFT_06576 0.69 +0.1 19,045 - H281DRAFT_06576 0.69 -0.4 19,045 - H281DRAFT_06576 0.69 +2.3 19,117 + -1.2 19,145 + +0.0 19,145 + +0.4 19,146 - +0.6 19,159 - -1.4 19,339 + H281DRAFT_06577 0.51 -0.2 19,340 - H281DRAFT_06577 0.51 -0.1 19,340 - H281DRAFT_06577 0.51 +1.2 19,436 - H281DRAFT_06577 0.74 +0.9 19,436 - H281DRAFT_06577 0.74 -0.7 19,483 + H281DRAFT_06577 0.86 +0.6 19,483 + H281DRAFT_06577 0.86 +1.0 19,483 + H281DRAFT_06577 0.86 +0.6 19,484 - H281DRAFT_06577 0.86 +0.4 19,484 - H281DRAFT_06577 0.86 +0.1 19,484 - H281DRAFT_06577 0.86 +0.3 19,542 - +0.8 19,638 - -1.0 19,721 + +0.5 19,721 + +1.0 19,722 - -0.9 19,758 - -1.8 19,983 - H281DRAFT_06578 0.31 -0.3 20,046 + H281DRAFT_06578 0.38 +1.1 20,046 + H281DRAFT_06578 0.38 +1.2 20,047 - +1.1 20,297 + H281DRAFT_06578 0.68 +0.9 20,298 - H281DRAFT_06578 0.68 +1.3 20,338 - H281DRAFT_06578 0.72 -0.5 20,511 + -1.7 20,511 + +0.2 20,512 - -0.8 20,512 - -0.5 20,512 - +0.2 20,937 + H281DRAFT_06579 0.26 -0.2 20,937 + H281DRAFT_06579 0.26 -0.3 20,937 + H281DRAFT_06579 0.26 -0.4 20,937 + H281DRAFT_06579 0.26 +0.7 20,937 + H281DRAFT_06579 0.26 -1.0 20,937 + H281DRAFT_06579 0.26 -0.6 20,937 + H281DRAFT_06579 0.26 +0.8 20,938 - H281DRAFT_06579 0.26 +0.1 21,040 - H281DRAFT_06579 0.36 -1.0 21,108 + H281DRAFT_06579 0.43 +0.7 21,109 - H281DRAFT_06579 0.43 -0.2 21,109 - H281DRAFT_06579 0.43 -0.6 21,450 + H281DRAFT_06579 0.76 -0.4 21,451 - H281DRAFT_06579 0.76 +1.1 21,528 + H281DRAFT_06579 0.84 +1.1
Or see this region's nucleotide sequence