Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06525

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06524 and H281DRAFT_06525 are separated by 6 nucleotidesH281DRAFT_06525 and H281DRAFT_06527 are separated by 925 nucleotides H281DRAFT_06524: H281DRAFT_06524 - cobaltochelatase CobN subunit, at 3,307 to 7,122 _06524 H281DRAFT_06525: H281DRAFT_06525 - cobalamin biosynthesis protein CobW, at 7,129 to 8,310 _06525 H281DRAFT_06527: H281DRAFT_06527 - uroporphyrin-III C-methyltransferase, at 9,236 to 10,003 _06527 Position (kb) 7 8 9Strain fitness (log2 ratio) -1 0 1at 6.171 kb on + strand, within H281DRAFT_06524at 6.196 kb on - strand, within H281DRAFT_06524at 6.368 kb on - strand, within H281DRAFT_06524at 6.368 kb on - strand, within H281DRAFT_06524at 6.403 kb on - strand, within H281DRAFT_06524at 6.845 kb on + strandat 6.846 kb on - strandat 6.943 kb on + strandat 6.943 kb on + strandat 7.080 kb on + strandat 7.081 kb on - strandat 7.284 kb on - strand, within H281DRAFT_06525at 7.284 kb on - strand, within H281DRAFT_06525at 7.405 kb on + strand, within H281DRAFT_06525at 7.548 kb on + strand, within H281DRAFT_06525at 8.015 kb on + strand, within H281DRAFT_06525at 8.070 kb on + strand, within H281DRAFT_06525at 8.326 kb on + strandat 8.326 kb on + strandat 8.327 kb on - strandat 8.476 kb on + strandat 8.477 kb on - strandat 8.619 kb on + strandat 8.620 kb on - strandat 8.761 kb on + strandat 8.762 kb on - strandat 8.766 kb on + strandat 8.810 kb on - strandat 8.863 kb on + strandat 8.927 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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6,171 + H281DRAFT_06524 0.75 +0.7
6,196 - H281DRAFT_06524 0.76 +1.5
6,368 - H281DRAFT_06524 0.80 +0.7
6,368 - H281DRAFT_06524 0.80 +0.4
6,403 - H281DRAFT_06524 0.81 -0.1
6,845 + +1.0
6,846 - -0.1
6,943 + -0.6
6,943 + +0.2
7,080 + +0.6
7,081 - +1.1
7,284 - H281DRAFT_06525 0.13 +0.8
7,284 - H281DRAFT_06525 0.13 +0.4
7,405 + H281DRAFT_06525 0.23 -1.4
7,548 + H281DRAFT_06525 0.35 +0.5
8,015 + H281DRAFT_06525 0.75 +0.5
8,070 + H281DRAFT_06525 0.80 +1.3
8,326 + +0.4
8,326 + +0.6
8,327 - -0.3
8,476 + +0.4
8,477 - -0.7
8,619 + +1.5
8,620 - -0.6
8,761 + +0.3
8,762 - +0.9
8,766 + -1.2
8,810 - -0.3
8,863 + +0.3
8,927 - +1.5

Or see this region's nucleotide sequence