Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06520 and H281DRAFT_06521 are separated by 36 nucleotides H281DRAFT_06521 and H281DRAFT_06522 are separated by 27 nucleotides H281DRAFT_06522 and H281DRAFT_06523 overlap by 193 nucleotides H281DRAFT_06523 and H281DRAFT_06524 overlap by 4 nucleotides
H281DRAFT_06520: H281DRAFT_06520 - c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains, at 534 to 1,478
_06520
H281DRAFT_06521: H281DRAFT_06521 - magnesium chelatase subunit ChlD-like protein, at 1,515 to 1,955
_06521
H281DRAFT_06522: H281DRAFT_06522 - hypothetical protein, at 1,983 to 2,420
_06522
H281DRAFT_06523: H281DRAFT_06523 - protoporphyrin IX magnesium-chelatase (EC 6.6.1.1), at 2,228 to 3,310
_06523
H281DRAFT_06524: H281DRAFT_06524 - cobaltochelatase CobN subunit, at 3,307 to 7,122
_06524
Position (kb)
2
3
4 Strain fitness (log2 ratio)
-2
-1
0
1 at 1.309 kb on + strand, within H281DRAFT_06520 at 1.309 kb on + strand, within H281DRAFT_06520 at 1.309 kb on + strand, within H281DRAFT_06520 at 1.310 kb on - strand, within H281DRAFT_06520 at 1.310 kb on - strand, within H281DRAFT_06520 at 1.411 kb on + strand at 1.412 kb on - strand at 1.513 kb on + strand at 1.514 kb on - strand at 1.618 kb on - strand, within H281DRAFT_06521 at 2.298 kb on + strand at 2.344 kb on + strand at 2.410 kb on + strand at 2.564 kb on - strand, within H281DRAFT_06523 at 2.649 kb on + strand, within H281DRAFT_06523 at 2.703 kb on + strand, within H281DRAFT_06523 at 2.857 kb on + strand, within H281DRAFT_06523 at 2.857 kb on + strand, within H281DRAFT_06523 at 2.958 kb on + strand, within H281DRAFT_06523 at 2.958 kb on + strand, within H281DRAFT_06523 at 2.958 kb on + strand, within H281DRAFT_06523 at 2.958 kb on + strand, within H281DRAFT_06523 at 2.959 kb on - strand, within H281DRAFT_06523 at 2.959 kb on - strand, within H281DRAFT_06523 at 3.491 kb on + strand at 3.491 kb on + strand at 3.492 kb on - strand at 3.548 kb on + strand at 3.554 kb on + strand at 3.555 kb on - strand at 3.560 kb on + strand at 3.594 kb on + strand at 3.596 kb on + strand at 3.597 kb on - strand at 3.611 kb on - strand at 3.720 kb on - strand, within H281DRAFT_06524 at 3.786 kb on - strand, within H281DRAFT_06524 at 3.835 kb on + strand, within H281DRAFT_06524 at 3.835 kb on + strand, within H281DRAFT_06524 at 3.905 kb on + strand, within H281DRAFT_06524 at 3.906 kb on - strand, within H281DRAFT_06524 at 3.906 kb on - strand, within H281DRAFT_06524 at 3.929 kb on + strand, within H281DRAFT_06524 at 3.930 kb on - strand, within H281DRAFT_06524
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 1,309 + H281DRAFT_06520 0.82 +0.7 1,309 + H281DRAFT_06520 0.82 +0.1 1,309 + H281DRAFT_06520 0.82 -2.1 1,310 - H281DRAFT_06520 0.82 +0.5 1,310 - H281DRAFT_06520 0.82 +0.2 1,411 + +1.0 1,412 - +1.3 1,513 + -2.5 1,514 - -0.4 1,618 - H281DRAFT_06521 0.23 +0.2 2,298 + +1.3 2,344 + +0.7 2,410 + +0.9 2,564 - H281DRAFT_06523 0.31 +0.7 2,649 + H281DRAFT_06523 0.39 +0.9 2,703 + H281DRAFT_06523 0.44 +0.8 2,857 + H281DRAFT_06523 0.58 +0.3 2,857 + H281DRAFT_06523 0.58 -0.1 2,958 + H281DRAFT_06523 0.67 +1.2 2,958 + H281DRAFT_06523 0.67 +1.3 2,958 + H281DRAFT_06523 0.67 +0.8 2,958 + H281DRAFT_06523 0.67 +1.5 2,959 - H281DRAFT_06523 0.67 +0.0 2,959 - H281DRAFT_06523 0.67 +0.2 3,491 + +1.1 3,491 + -1.6 3,492 - +0.1 3,548 + +0.5 3,554 + +1.1 3,555 - +1.3 3,560 + -0.7 3,594 + +0.9 3,596 + -1.7 3,597 - -0.0 3,611 - +1.5 3,720 - H281DRAFT_06524 0.11 +0.3 3,786 - H281DRAFT_06524 0.13 -0.6 3,835 + H281DRAFT_06524 0.14 +0.8 3,835 + H281DRAFT_06524 0.14 +0.3 3,905 + H281DRAFT_06524 0.16 +1.6 3,906 - H281DRAFT_06524 0.16 +0.8 3,906 - H281DRAFT_06524 0.16 +0.7 3,929 + H281DRAFT_06524 0.16 +0.7 3,930 - H281DRAFT_06524 0.16 +0.3
Or see this region's nucleotide sequence