Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06448

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06447 and H281DRAFT_06448 are separated by 94 nucleotides H281DRAFT_06447: H281DRAFT_06447 - protein PsiE, at 52,737 to 53,195 _06447 H281DRAFT_06448: H281DRAFT_06448 - transcriptional regulator, LysR family, at 53,290 to 54,207 _06448 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 52.391 kb on + strandat 52.391 kb on + strandat 52.398 kb on + strandat 52.398 kb on + strandat 52.398 kb on + strandat 52.399 kb on - strandat 52.399 kb on - strandat 52.399 kb on - strandat 52.558 kb on + strandat 52.558 kb on + strandat 52.567 kb on + strandat 52.567 kb on + strandat 52.738 kb on + strandat 52.738 kb on + strandat 52.738 kb on + strandat 52.739 kb on - strandat 52.816 kb on - strand, within H281DRAFT_06447at 52.816 kb on - strand, within H281DRAFT_06447at 52.845 kb on + strand, within H281DRAFT_06447at 52.846 kb on - strand, within H281DRAFT_06447at 52.846 kb on - strand, within H281DRAFT_06447at 52.859 kb on + strand, within H281DRAFT_06447at 52.860 kb on - strand, within H281DRAFT_06447at 52.863 kb on - strand, within H281DRAFT_06447at 52.868 kb on + strand, within H281DRAFT_06447at 52.931 kb on + strand, within H281DRAFT_06447at 52.968 kb on + strand, within H281DRAFT_06447at 52.973 kb on - strand, within H281DRAFT_06447at 53.003 kb on - strand, within H281DRAFT_06447at 53.004 kb on + strand, within H281DRAFT_06447at 53.005 kb on - strand, within H281DRAFT_06447at 53.005 kb on - strand, within H281DRAFT_06447at 53.005 kb on - strand, within H281DRAFT_06447at 53.019 kb on + strand, within H281DRAFT_06447at 53.020 kb on - strand, within H281DRAFT_06447at 53.130 kb on + strand, within H281DRAFT_06447at 53.291 kb on + strandat 53.529 kb on - strand, within H281DRAFT_06448at 53.672 kb on - strand, within H281DRAFT_06448at 53.696 kb on + strand, within H281DRAFT_06448at 53.747 kb on - strand, within H281DRAFT_06448at 53.980 kb on + strand, within H281DRAFT_06448at 53.981 kb on - strand, within H281DRAFT_06448at 54.004 kb on - strandat 54.038 kb on + strand, within H281DRAFT_06448at 54.039 kb on - strand, within H281DRAFT_06448at 54.081 kb on - strand, within H281DRAFT_06448at 54.081 kb on - strand, within H281DRAFT_06448at 54.154 kb on - strandat 54.179 kb on + strandat 54.179 kb on + strandat 54.179 kb on + strandat 54.180 kb on - strandat 54.180 kb on - strandat 54.181 kb on + strandat 54.181 kb on + strandat 54.181 kb on + strandat 54.182 kb on - strandat 54.182 kb on - strandat 54.182 kb on - strandat 54.182 kb on - strandat 54.182 kb on - strandat 54.210 kb on + strandat 54.361 kb on + strandat 54.361 kb on + strandat 54.361 kb on + strandat 54.361 kb on + strandat 54.361 kb on + strandat 54.362 kb on - strandat 54.362 kb on - strandat 54.362 kb on - strandat 54.362 kb on - strandat 54.362 kb on - strandat 54.431 kb on + strandat 54.431 kb on + strandat 54.432 kb on - strandat 54.441 kb on + strandat 54.613 kb on - strandat 54.756 kb on - strandat 54.784 kb on + strandat 54.784 kb on + strandat 54.785 kb on - strandat 54.817 kb on + strandat 54.817 kb on + strandat 55.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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52,391 + +0.4
52,391 + -0.7
52,398 + -0.4
52,398 + -0.8
52,398 + +0.5
52,399 - +0.4
52,399 - +0.8
52,399 - +0.3
52,558 + +0.9
52,558 + +1.0
52,567 + +0.5
52,567 + -0.7
52,738 + +0.4
52,738 + -0.2
52,738 + +1.1
52,739 - -0.2
52,816 - H281DRAFT_06447 0.17 -0.1
52,816 - H281DRAFT_06447 0.17 +0.1
52,845 + H281DRAFT_06447 0.24 -0.2
52,846 - H281DRAFT_06447 0.24 -0.3
52,846 - H281DRAFT_06447 0.24 -0.3
52,859 + H281DRAFT_06447 0.27 +0.6
52,860 - H281DRAFT_06447 0.27 +0.9
52,863 - H281DRAFT_06447 0.27 -0.3
52,868 + H281DRAFT_06447 0.29 -0.5
52,931 + H281DRAFT_06447 0.42 +0.2
52,968 + H281DRAFT_06447 0.50 +0.2
52,973 - H281DRAFT_06447 0.51 -1.1
53,003 - H281DRAFT_06447 0.58 +1.6
53,004 + H281DRAFT_06447 0.58 -0.8
53,005 - H281DRAFT_06447 0.58 -0.1
53,005 - H281DRAFT_06447 0.58 -0.0
53,005 - H281DRAFT_06447 0.58 +0.2
53,019 + H281DRAFT_06447 0.61 -0.7
53,020 - H281DRAFT_06447 0.62 +0.3
53,130 + H281DRAFT_06447 0.86 +0.4
53,291 + +0.1
53,529 - H281DRAFT_06448 0.26 -1.1
53,672 - H281DRAFT_06448 0.42 -0.4
53,696 + H281DRAFT_06448 0.44 +0.7
53,747 - H281DRAFT_06448 0.50 +0.2
53,980 + H281DRAFT_06448 0.75 -0.2
53,981 - H281DRAFT_06448 0.75 -0.2
54,004 - +1.1
54,038 + H281DRAFT_06448 0.81 -0.6
54,039 - H281DRAFT_06448 0.82 +1.4
54,081 - H281DRAFT_06448 0.86 -0.2
54,081 - H281DRAFT_06448 0.86 +0.4
54,154 - +0.0
54,179 + +1.1
54,179 + +0.2
54,179 + +0.0
54,180 - -0.9
54,180 - +0.6
54,181 + -1.7
54,181 + -0.2
54,181 + +0.3
54,182 - +0.9
54,182 - +1.7
54,182 - +2.7
54,182 - -2.2
54,182 - -1.4
54,210 + +0.0
54,361 + -0.2
54,361 + -0.7
54,361 + +0.5
54,361 + +1.5
54,361 + +0.3
54,362 - +0.8
54,362 - -0.6
54,362 - +0.5
54,362 - -0.4
54,362 - -0.3
54,431 + +0.5
54,431 + -0.0
54,432 - +0.7
54,441 + +0.6
54,613 - -0.4
54,756 - +0.1
54,784 + -0.5
54,784 + +0.4
54,785 - -0.2
54,817 + +0.4
54,817 + -1.8
55,168 + -0.2

Or see this region's nucleotide sequence