Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06415

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06414 and H281DRAFT_06415 are separated by 890 nucleotidesH281DRAFT_06415 and H281DRAFT_06416 are separated by 12 nucleotidesH281DRAFT_06416 and H281DRAFT_06417 are separated by 321 nucleotides H281DRAFT_06414: H281DRAFT_06414 - EamA domain-containing membrane protein RarD, at 13,367 to 14,239 _06414 H281DRAFT_06415: H281DRAFT_06415 - hypothetical protein, at 15,130 to 15,894 _06415 H281DRAFT_06416: H281DRAFT_06416 - Zn-dependent alcohol dehydrogenases, class III, at 15,907 to 16,434 _06416 H281DRAFT_06417: H281DRAFT_06417 - Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family, at 16,756 to 17,805 _06417 Position (kb) 15 16Strain fitness (log2 ratio) -1 0 1at 14.196 kb on + strandat 14.196 kb on + strandat 14.197 kb on - strandat 14.255 kb on - strandat 14.255 kb on - strandat 14.396 kb on + strandat 14.509 kb on - strandat 14.517 kb on - strandat 14.517 kb on - strandat 14.520 kb on + strandat 14.520 kb on + strandat 14.521 kb on - strandat 14.521 kb on - strandat 14.521 kb on - strandat 14.575 kb on + strandat 14.576 kb on - strandat 14.576 kb on - strandat 14.630 kb on - strandat 14.637 kb on + strandat 14.653 kb on + strandat 14.672 kb on + strandat 14.673 kb on - strandat 14.673 kb on - strandat 14.675 kb on + strandat 14.787 kb on + strandat 14.787 kb on + strandat 14.824 kb on - strandat 14.833 kb on - strandat 15.019 kb on + strandat 15.020 kb on - strandat 15.020 kb on - strandat 15.118 kb on + strandat 15.118 kb on + strandat 15.118 kb on + strandat 15.119 kb on - strandat 15.169 kb on + strandat 15.170 kb on - strandat 15.173 kb on + strandat 15.515 kb on + strand, within H281DRAFT_06415at 15.657 kb on - strand, within H281DRAFT_06415at 15.694 kb on + strand, within H281DRAFT_06415at 15.695 kb on - strand, within H281DRAFT_06415at 15.695 kb on - strand, within H281DRAFT_06415at 15.695 kb on - strand, within H281DRAFT_06415at 15.695 kb on - strand, within H281DRAFT_06415at 15.758 kb on + strand, within H281DRAFT_06415at 15.759 kb on - strand, within H281DRAFT_06415at 15.810 kb on + strand, within H281DRAFT_06415at 15.810 kb on + strand, within H281DRAFT_06415at 15.811 kb on - strand, within H281DRAFT_06415at 15.836 kb on - strandat 15.957 kb on + strandat 15.957 kb on + strandat 15.957 kb on + strandat 15.957 kb on + strandat 15.958 kb on - strandat 15.961 kb on - strand, within H281DRAFT_06416at 15.961 kb on - strand, within H281DRAFT_06416at 15.961 kb on - strand, within H281DRAFT_06416at 15.987 kb on + strand, within H281DRAFT_06416at 16.088 kb on - strand, within H281DRAFT_06416at 16.101 kb on + strand, within H281DRAFT_06416at 16.101 kb on + strand, within H281DRAFT_06416at 16.300 kb on + strand, within H281DRAFT_06416at 16.300 kb on + strand, within H281DRAFT_06416at 16.300 kb on + strand, within H281DRAFT_06416at 16.301 kb on - strand, within H281DRAFT_06416at 16.301 kb on - strand, within H281DRAFT_06416at 16.417 kb on + strandat 16.417 kb on + strandat 16.417 kb on + strandat 16.417 kb on + strandat 16.417 kb on + strandat 16.462 kb on + strandat 16.497 kb on + strandat 16.523 kb on + strandat 16.523 kb on + strandat 16.524 kb on - strandat 16.557 kb on + strandat 16.578 kb on + strandat 16.578 kb on + strandat 16.578 kb on + strandat 16.578 kb on + strandat 16.579 kb on - strandat 16.730 kb on - strandat 16.730 kb on - strandat 16.733 kb on + strandat 16.757 kb on + strandat 16.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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14,196 + +0.6
14,196 + +0.5
14,197 - +0.7
14,255 - +0.8
14,255 - +0.4
14,396 + -0.7
14,509 - -1.4
14,517 - +0.2
14,517 - +0.2
14,520 + -0.0
14,520 + -0.2
14,521 - +0.4
14,521 - -0.6
14,521 - -0.3
14,575 + -1.2
14,576 - -0.0
14,576 - +0.7
14,630 - +0.1
14,637 + +1.5
14,653 + -0.7
14,672 + -0.1
14,673 - +0.2
14,673 - -0.0
14,675 + +1.4
14,787 + +0.1
14,787 + -0.6
14,824 - +0.5
14,833 - +0.1
15,019 + +0.1
15,020 - +0.1
15,020 - -1.3
15,118 + -0.9
15,118 + -0.3
15,118 + +1.1
15,119 - -0.2
15,169 + +0.3
15,170 - +0.2
15,173 + +0.2
15,515 + H281DRAFT_06415 0.50 +1.3
15,657 - H281DRAFT_06415 0.69 -0.3
15,694 + H281DRAFT_06415 0.74 -0.0
15,695 - H281DRAFT_06415 0.74 -0.6
15,695 - H281DRAFT_06415 0.74 -1.1
15,695 - H281DRAFT_06415 0.74 +0.1
15,695 - H281DRAFT_06415 0.74 +0.8
15,758 + H281DRAFT_06415 0.82 -0.5
15,759 - H281DRAFT_06415 0.82 -0.2
15,810 + H281DRAFT_06415 0.89 -0.9
15,810 + H281DRAFT_06415 0.89 -0.4
15,811 - H281DRAFT_06415 0.89 +0.4
15,836 - +1.2
15,957 + +0.1
15,957 + -1.7
15,957 + +1.2
15,957 + -0.5
15,958 - +0.3
15,961 - H281DRAFT_06416 0.10 +0.6
15,961 - H281DRAFT_06416 0.10 +0.1
15,961 - H281DRAFT_06416 0.10 -0.6
15,987 + H281DRAFT_06416 0.15 -0.8
16,088 - H281DRAFT_06416 0.34 -0.6
16,101 + H281DRAFT_06416 0.37 -0.5
16,101 + H281DRAFT_06416 0.37 +0.4
16,300 + H281DRAFT_06416 0.74 -0.0
16,300 + H281DRAFT_06416 0.74 +1.3
16,300 + H281DRAFT_06416 0.74 +0.3
16,301 - H281DRAFT_06416 0.75 -1.0
16,301 - H281DRAFT_06416 0.75 -0.7
16,417 + -0.6
16,417 + -0.3
16,417 + +0.0
16,417 + -0.0
16,417 + -0.6
16,462 + -0.5
16,497 + +1.6
16,523 + +0.6
16,523 + -0.4
16,524 - -0.9
16,557 + +0.6
16,578 + +0.2
16,578 + +0.0
16,578 + +0.2
16,578 + +0.6
16,579 - +0.0
16,730 - -0.2
16,730 - -0.5
16,733 + -0.2
16,757 + -0.2
16,757 + +0.5

Or see this region's nucleotide sequence