Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06211

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06210 and H281DRAFT_06211 are separated by 146 nucleotidesH281DRAFT_06211 and H281DRAFT_06212 are separated by 838 nucleotides H281DRAFT_06210: H281DRAFT_06210 - aconitate hydratase, at 102,690 to 105,386 _06210 H281DRAFT_06211: H281DRAFT_06211 - transcriptional regulator, propionate catabolism operon regulatory protein, at 105,533 to 107,440 _06211 H281DRAFT_06212: H281DRAFT_06212 - Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains, at 108,279 to 109,454 _06212 Position (kb) 105 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 104.603 kb on + strand, within H281DRAFT_06210at 104.604 kb on - strand, within H281DRAFT_06210at 104.610 kb on - strand, within H281DRAFT_06210at 104.610 kb on - strand, within H281DRAFT_06210at 104.658 kb on + strand, within H281DRAFT_06210at 104.661 kb on + strand, within H281DRAFT_06210at 105.398 kb on + strandat 105.417 kb on + strandat 105.418 kb on - strandat 105.453 kb on + strandat 105.454 kb on - strandat 105.471 kb on - strandat 105.493 kb on + strandat 105.493 kb on + strandat 105.547 kb on + strandat 105.547 kb on + strandat 105.574 kb on + strandat 105.620 kb on + strandat 105.641 kb on + strandat 105.642 kb on - strandat 105.642 kb on - strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.660 kb on + strandat 105.661 kb on - strandat 105.661 kb on - strandat 105.661 kb on - strandat 105.761 kb on + strand, within H281DRAFT_06211at 105.761 kb on + strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.762 kb on - strand, within H281DRAFT_06211at 105.795 kb on + strand, within H281DRAFT_06211at 106.363 kb on + strand, within H281DRAFT_06211at 106.363 kb on + strand, within H281DRAFT_06211at 106.364 kb on - strand, within H281DRAFT_06211at 106.364 kb on - strand, within H281DRAFT_06211at 106.364 kb on - strand, within H281DRAFT_06211at 106.364 kb on - strand, within H281DRAFT_06211at 106.367 kb on + strand, within H281DRAFT_06211at 106.367 kb on + strand, within H281DRAFT_06211at 106.367 kb on + strand, within H281DRAFT_06211at 106.368 kb on - strand, within H281DRAFT_06211at 106.368 kb on - strand, within H281DRAFT_06211at 106.453 kb on + strand, within H281DRAFT_06211at 106.506 kb on - strand, within H281DRAFT_06211at 106.531 kb on + strand, within H281DRAFT_06211at 106.571 kb on + strand, within H281DRAFT_06211at 106.572 kb on - strand, within H281DRAFT_06211at 106.686 kb on + strand, within H281DRAFT_06211at 106.785 kb on + strand, within H281DRAFT_06211at 106.786 kb on - strand, within H281DRAFT_06211at 106.896 kb on + strand, within H281DRAFT_06211at 106.904 kb on - strand, within H281DRAFT_06211at 107.014 kb on - strand, within H281DRAFT_06211at 107.014 kb on - strand, within H281DRAFT_06211at 107.038 kb on - strand, within H281DRAFT_06211at 107.189 kb on + strand, within H281DRAFT_06211at 107.190 kb on - strand, within H281DRAFT_06211at 107.191 kb on + strand, within H281DRAFT_06211at 107.196 kb on + strand, within H281DRAFT_06211at 107.196 kb on + strand, within H281DRAFT_06211at 107.197 kb on - strand, within H281DRAFT_06211at 107.197 kb on - strand, within H281DRAFT_06211at 107.239 kb on + strand, within H281DRAFT_06211at 107.240 kb on - strand, within H281DRAFT_06211at 107.240 kb on - strand, within H281DRAFT_06211at 107.352 kb on + strandat 107.353 kb on - strandat 107.466 kb on - strandat 107.468 kb on + strandat 107.469 kb on - strandat 107.469 kb on - strandat 107.662 kb on - strandat 107.663 kb on + strandat 107.663 kb on + strandat 107.664 kb on - strandat 107.664 kb on - strandat 107.664 kb on - strandat 107.666 kb on + strandat 107.666 kb on + strandat 107.719 kb on + strandat 107.719 kb on + strandat 107.719 kb on + strandat 107.720 kb on - strandat 107.721 kb on + strandat 107.722 kb on - strandat 107.859 kb on + strandat 107.859 kb on + strandat 107.860 kb on - strandat 107.862 kb on - strandat 107.862 kb on - strandat 107.862 kb on - strandat 107.934 kb on - strandat 107.934 kb on - strandat 107.936 kb on - strandat 107.976 kb on + strandat 107.976 kb on + strandat 108.050 kb on + strandat 108.051 kb on - strandat 108.051 kb on - strandat 108.083 kb on + strandat 108.084 kb on - strandat 108.084 kb on - strandat 108.182 kb on + strandat 108.204 kb on + strandat 108.205 kb on - strandat 108.286 kb on + strandat 108.287 kb on - strandat 108.296 kb on + strandat 108.296 kb on + strandat 108.296 kb on + strandat 108.296 kb on + strandat 108.297 kb on - strandat 108.297 kb on - strandat 108.297 kb on - strandat 108.305 kb on - strandat 108.328 kb on + strandat 108.328 kb on + strandat 108.329 kb on - strandat 108.331 kb on + strandat 108.331 kb on + strandat 108.331 kb on + strandat 108.332 kb on - strandat 108.335 kb on + strandat 108.336 kb on - strandat 108.421 kb on + strandat 108.421 kb on + strand, within H281DRAFT_06212

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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104,603 + H281DRAFT_06210 0.71 +0.0
104,604 - H281DRAFT_06210 0.71 +0.1
104,610 - H281DRAFT_06210 0.71 -0.5
104,610 - H281DRAFT_06210 0.71 +1.2
104,658 + H281DRAFT_06210 0.73 -0.3
104,661 + H281DRAFT_06210 0.73 +0.7
105,398 + +0.3
105,417 + +0.3
105,418 - +0.9
105,453 + +0.4
105,454 - +0.2
105,471 - -0.5
105,493 + +0.3
105,493 + -0.1
105,547 + +0.1
105,547 + -0.1
105,574 + -0.7
105,620 + -1.7
105,641 + -1.0
105,642 - -0.2
105,642 - -0.3
105,660 + +0.3
105,660 + -1.7
105,660 + -0.4
105,660 + +0.2
105,660 + +0.4
105,660 + +0.1
105,660 + +0.0
105,660 + -0.0
105,661 - +0.6
105,661 - -0.1
105,661 - +0.5
105,761 + H281DRAFT_06211 0.12 +0.4
105,761 + H281DRAFT_06211 0.12 -0.3
105,762 - H281DRAFT_06211 0.12 +0.5
105,762 - H281DRAFT_06211 0.12 -1.6
105,762 - H281DRAFT_06211 0.12 +0.2
105,762 - H281DRAFT_06211 0.12 -0.7
105,762 - H281DRAFT_06211 0.12 +0.8
105,762 - H281DRAFT_06211 0.12 -0.5
105,762 - H281DRAFT_06211 0.12 -0.2
105,795 + H281DRAFT_06211 0.14 -0.2
106,363 + H281DRAFT_06211 0.44 +0.0
106,363 + H281DRAFT_06211 0.44 -0.0
106,364 - H281DRAFT_06211 0.44 +0.8
106,364 - H281DRAFT_06211 0.44 -1.7
106,364 - H281DRAFT_06211 0.44 +0.8
106,364 - H281DRAFT_06211 0.44 +0.7
106,367 + H281DRAFT_06211 0.44 -0.8
106,367 + H281DRAFT_06211 0.44 -0.3
106,367 + H281DRAFT_06211 0.44 +0.9
106,368 - H281DRAFT_06211 0.44 -0.1
106,368 - H281DRAFT_06211 0.44 -0.4
106,453 + H281DRAFT_06211 0.48 -1.4
106,506 - H281DRAFT_06211 0.51 +0.2
106,531 + H281DRAFT_06211 0.52 -0.2
106,571 + H281DRAFT_06211 0.54 -0.1
106,572 - H281DRAFT_06211 0.54 -0.8
106,686 + H281DRAFT_06211 0.60 +1.4
106,785 + H281DRAFT_06211 0.66 -0.4
106,786 - H281DRAFT_06211 0.66 -0.1
106,896 + H281DRAFT_06211 0.71 -0.7
106,904 - H281DRAFT_06211 0.72 +0.1
107,014 - H281DRAFT_06211 0.78 -1.3
107,014 - H281DRAFT_06211 0.78 +0.1
107,038 - H281DRAFT_06211 0.79 +1.4
107,189 + H281DRAFT_06211 0.87 -0.7
107,190 - H281DRAFT_06211 0.87 -0.2
107,191 + H281DRAFT_06211 0.87 -0.8
107,196 + H281DRAFT_06211 0.87 +0.5
107,196 + H281DRAFT_06211 0.87 -0.5
107,197 - H281DRAFT_06211 0.87 -0.6
107,197 - H281DRAFT_06211 0.87 -0.0
107,239 + H281DRAFT_06211 0.89 -1.1
107,240 - H281DRAFT_06211 0.89 +0.3
107,240 - H281DRAFT_06211 0.89 +0.4
107,352 + +0.1
107,353 - -0.6
107,466 - +0.5
107,468 + +1.5
107,469 - -0.3
107,469 - -0.2
107,662 - -0.2
107,663 + +0.7
107,663 + +0.1
107,664 - -0.1
107,664 - +0.5
107,664 - +0.4
107,666 + +0.0
107,666 + +0.6
107,719 + -1.1
107,719 + -1.1
107,719 + +0.3
107,720 - +0.4
107,721 + -1.3
107,722 - +1.2
107,859 + -0.2
107,859 + +0.1
107,860 - +0.2
107,862 - +0.1
107,862 - -3.0
107,862 - -1.7
107,934 - -0.4
107,934 - -0.7
107,936 - +0.1
107,976 + -0.2
107,976 + +0.5
108,050 + +0.7
108,051 - +0.6
108,051 - +0.7
108,083 + -0.0
108,084 - +1.3
108,084 - -0.6
108,182 + -0.5
108,204 + +0.6
108,205 - +0.3
108,286 + +0.0
108,287 - +0.8
108,296 + -1.2
108,296 + +0.4
108,296 + -0.1
108,296 + -1.3
108,297 - +0.6
108,297 - +0.0
108,297 - +0.8
108,305 - -1.0
108,328 + +0.7
108,328 + +0.3
108,329 - +1.1
108,331 + +1.0
108,331 + -1.5
108,331 + +0.1
108,332 - +0.2
108,335 + -0.0
108,336 - -0.8
108,421 + +3.4
108,421 + H281DRAFT_06212 0.12 -0.2

Or see this region's nucleotide sequence