Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06019

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06018 and H281DRAFT_06019 are separated by 160 nucleotidesH281DRAFT_06019 and H281DRAFT_06020 are separated by 186 nucleotides H281DRAFT_06018: H281DRAFT_06018 - choline monooxygenase, at 21,467 to 22,573 _06018 H281DRAFT_06019: H281DRAFT_06019 - thiosulfate/3-mercaptopyruvate sulfurtransferase, at 22,734 to 23,603 _06019 H281DRAFT_06020: H281DRAFT_06020 - carboxymethylenebutenolidase, at 23,790 to 24,662 _06020 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 21.761 kb on - strand, within H281DRAFT_06018at 21.761 kb on - strand, within H281DRAFT_06018at 21.788 kb on + strand, within H281DRAFT_06018at 21.788 kb on + strand, within H281DRAFT_06018at 21.789 kb on - strand, within H281DRAFT_06018at 21.789 kb on - strand, within H281DRAFT_06018at 21.789 kb on - strand, within H281DRAFT_06018at 21.999 kb on - strand, within H281DRAFT_06018at 21.999 kb on - strand, within H281DRAFT_06018at 21.999 kb on - strand, within H281DRAFT_06018at 21.999 kb on - strand, within H281DRAFT_06018at 22.025 kb on + strand, within H281DRAFT_06018at 22.026 kb on - strand, within H281DRAFT_06018at 22.037 kb on + strand, within H281DRAFT_06018at 22.038 kb on - strand, within H281DRAFT_06018at 22.116 kb on - strand, within H281DRAFT_06018at 22.116 kb on - strand, within H281DRAFT_06018at 22.172 kb on + strand, within H281DRAFT_06018at 22.247 kb on + strand, within H281DRAFT_06018at 22.247 kb on + strand, within H281DRAFT_06018at 22.247 kb on + strand, within H281DRAFT_06018at 22.248 kb on - strand, within H281DRAFT_06018at 22.248 kb on - strand, within H281DRAFT_06018at 22.250 kb on + strand, within H281DRAFT_06018at 22.251 kb on - strand, within H281DRAFT_06018at 22.346 kb on + strand, within H281DRAFT_06018at 22.346 kb on + strand, within H281DRAFT_06018at 22.346 kb on + strand, within H281DRAFT_06018at 22.347 kb on - strand, within H281DRAFT_06018at 22.347 kb on - strand, within H281DRAFT_06018at 22.347 kb on - strand, within H281DRAFT_06018at 22.406 kb on + strand, within H281DRAFT_06018at 22.406 kb on + strand, within H281DRAFT_06018at 22.406 kb on + strand, within H281DRAFT_06018at 22.407 kb on - strand, within H281DRAFT_06018at 22.407 kb on - strand, within H281DRAFT_06018at 22.407 kb on - strand, within H281DRAFT_06018at 22.650 kb on - strandat 22.654 kb on + strandat 22.654 kb on + strandat 22.655 kb on - strandat 22.655 kb on - strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.750 kb on - strandat 22.750 kb on - strandat 22.896 kb on + strand, within H281DRAFT_06019at 22.896 kb on + strand, within H281DRAFT_06019at 22.896 kb on + strand, within H281DRAFT_06019at 22.937 kb on + strand, within H281DRAFT_06019at 23.049 kb on + strand, within H281DRAFT_06019at 23.049 kb on + strandat 23.050 kb on - strand, within H281DRAFT_06019at 23.249 kb on + strand, within H281DRAFT_06019at 23.249 kb on + strandat 23.399 kb on + strand, within H281DRAFT_06019at 23.400 kb on - strand, within H281DRAFT_06019at 23.425 kb on + strand, within H281DRAFT_06019at 23.602 kb on - strandat 23.668 kb on + strandat 23.668 kb on + strandat 23.668 kb on + strandat 23.669 kb on - strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.678 kb on + strandat 23.860 kb on + strandat 23.861 kb on - strandat 23.906 kb on - strand, within H281DRAFT_06020at 23.932 kb on - strand, within H281DRAFT_06020at 24.065 kb on + strand, within H281DRAFT_06020at 24.065 kb on + strand, within H281DRAFT_06020at 24.065 kb on + strand, within H281DRAFT_06020at 24.065 kb on + strand, within H281DRAFT_06020at 24.066 kb on - strand, within H281DRAFT_06020at 24.097 kb on + strand, within H281DRAFT_06020at 24.355 kb on + strand, within H281DRAFT_06020at 24.392 kb on + strand, within H281DRAFT_06020at 24.393 kb on - strand, within H281DRAFT_06020at 24.428 kb on + strand, within H281DRAFT_06020

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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21,761 - H281DRAFT_06018 0.27 +0.3
21,761 - H281DRAFT_06018 0.27 -0.7
21,788 + H281DRAFT_06018 0.29 +0.4
21,788 + H281DRAFT_06018 0.29 -0.4
21,789 - H281DRAFT_06018 0.29 -0.4
21,789 - H281DRAFT_06018 0.29 -0.7
21,789 - H281DRAFT_06018 0.29 -0.4
21,999 - H281DRAFT_06018 0.48 +0.4
21,999 - H281DRAFT_06018 0.48 -2.7
21,999 - H281DRAFT_06018 0.48 -0.3
21,999 - H281DRAFT_06018 0.48 -0.9
22,025 + H281DRAFT_06018 0.50 -0.1
22,026 - H281DRAFT_06018 0.50 +0.0
22,037 + H281DRAFT_06018 0.51 -0.8
22,038 - H281DRAFT_06018 0.52 -0.9
22,116 - H281DRAFT_06018 0.59 -0.9
22,116 - H281DRAFT_06018 0.59 -0.6
22,172 + H281DRAFT_06018 0.64 -0.5
22,247 + H281DRAFT_06018 0.70 -0.5
22,247 + H281DRAFT_06018 0.70 +0.4
22,247 + H281DRAFT_06018 0.70 -0.9
22,248 - H281DRAFT_06018 0.71 +0.3
22,248 - H281DRAFT_06018 0.71 -1.5
22,250 + H281DRAFT_06018 0.71 +0.4
22,251 - H281DRAFT_06018 0.71 -0.5
22,346 + H281DRAFT_06018 0.79 -0.2
22,346 + H281DRAFT_06018 0.79 -0.0
22,346 + H281DRAFT_06018 0.79 -0.4
22,347 - H281DRAFT_06018 0.79 -0.7
22,347 - H281DRAFT_06018 0.79 -0.4
22,347 - H281DRAFT_06018 0.79 +0.4
22,406 + H281DRAFT_06018 0.85 +0.5
22,406 + H281DRAFT_06018 0.85 -0.4
22,406 + H281DRAFT_06018 0.85 -0.0
22,407 - H281DRAFT_06018 0.85 -0.0
22,407 - H281DRAFT_06018 0.85 +0.9
22,407 - H281DRAFT_06018 0.85 -1.3
22,650 - +0.6
22,654 + -1.3
22,654 + -0.0
22,655 - +0.0
22,655 - +0.3
22,749 + -0.1
22,749 + +0.4
22,750 - +0.2
22,750 - +0.8
22,896 + H281DRAFT_06019 0.19 -0.1
22,896 + H281DRAFT_06019 0.19 +0.6
22,896 + H281DRAFT_06019 0.19 -0.1
22,937 + H281DRAFT_06019 0.23 +0.8
23,049 + H281DRAFT_06019 0.36 -0.5
23,049 + +1.1
23,050 - H281DRAFT_06019 0.36 -0.9
23,249 + H281DRAFT_06019 0.59 +0.2
23,249 + +1.1
23,399 + H281DRAFT_06019 0.76 -1.3
23,400 - H281DRAFT_06019 0.77 -1.4
23,425 + H281DRAFT_06019 0.79 -0.6
23,602 - +0.3
23,668 + -0.7
23,668 + +0.4
23,668 + -0.7
23,669 - +1.7
23,678 + +0.4
23,678 + -1.7
23,678 + +0.2
23,860 + -1.6
23,861 - -2.3
23,906 - H281DRAFT_06020 0.13 -0.2
23,932 - H281DRAFT_06020 0.16 +0.4
24,065 + H281DRAFT_06020 0.32 +0.8
24,065 + H281DRAFT_06020 0.32 -0.7
24,065 + H281DRAFT_06020 0.32 +2.4
24,065 + H281DRAFT_06020 0.32 -0.7
24,066 - H281DRAFT_06020 0.32 +0.4
24,097 + H281DRAFT_06020 0.35 -0.3
24,355 + H281DRAFT_06020 0.65 +0.4
24,392 + H281DRAFT_06020 0.69 +0.6
24,393 - H281DRAFT_06020 0.69 +1.2
24,428 + H281DRAFT_06020 0.73 +2.1

Or see this region's nucleotide sequence