Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05928

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05927 and H281DRAFT_05928 are separated by 410 nucleotidesH281DRAFT_05928 and H281DRAFT_05929 are separated by 25 nucleotides H281DRAFT_05927: H281DRAFT_05927 - Glycogen debranching enzyme (alpha-1,6-glucosidase), at 62,841 to 65,123 _05927 H281DRAFT_05928: H281DRAFT_05928 - hypothetical protein, at 65,534 to 65,935 _05928 H281DRAFT_05929: H281DRAFT_05929 - Pimeloyl-ACP methyl ester carboxylesterase, at 65,961 to 66,749 _05929 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1at 64.552 kb on + strand, within H281DRAFT_05927at 65.137 kb on - strandat 65.204 kb on - strandat 65.411 kb on + strandat 65.727 kb on + strand, within H281DRAFT_05928at 65.784 kb on - strand, within H281DRAFT_05928at 65.934 kb on - strandat 65.934 kb on - strandat 65.999 kb on - strandat 66.182 kb on - strand, within H281DRAFT_05929at 66.444 kb on + strand, within H281DRAFT_05929at 66.444 kb on + strand, within H281DRAFT_05929at 66.445 kb on - strand, within H281DRAFT_05929at 66.445 kb on - strand, within H281DRAFT_05929at 66.644 kb on - strand, within H281DRAFT_05929at 66.742 kb on + strandat 66.789 kb on - strandat 66.910 kb on + strandat 66.910 kb on + strandat 66.910 kb on + strandat 66.910 kb on + strandat 66.911 kb on - strandat 66.911 kb on - strandat 66.911 kb on - strandat 66.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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64,552 + H281DRAFT_05927 0.75 -0.2
65,137 - -1.2
65,204 - -0.1
65,411 + +1.2
65,727 + H281DRAFT_05928 0.48 -1.4
65,784 - H281DRAFT_05928 0.62 -1.0
65,934 - -0.6
65,934 - +0.3
65,999 - +0.2
66,182 - H281DRAFT_05929 0.28 +0.3
66,444 + H281DRAFT_05929 0.61 -1.3
66,444 + H281DRAFT_05929 0.61 +0.9
66,445 - H281DRAFT_05929 0.61 -0.5
66,445 - H281DRAFT_05929 0.61 +0.3
66,644 - H281DRAFT_05929 0.87 +0.5
66,742 + +1.2
66,789 - +0.2
66,910 + -0.6
66,910 + +0.9
66,910 + -2.6
66,910 + -0.4
66,911 - +0.7
66,911 - -1.3
66,911 - -0.3
66,920 + -0.4

Or see this region's nucleotide sequence