Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05846

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05845 and H281DRAFT_05846 are separated by 277 nucleotidesH281DRAFT_05846 and H281DRAFT_05847 are separated by 155 nucleotides H281DRAFT_05845: H281DRAFT_05845 - Predicted arabinose efflux permease, MFS family, at 121,393 to 122,625 _05845 H281DRAFT_05846: H281DRAFT_05846 - malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 122,903 to 125,185 _05846 H281DRAFT_05847: H281DRAFT_05847 - indolepyruvate ferredoxin oxidoreductase, at 125,341 to 128,940 _05847 Position (kb) 122 123 124 125 126Strain fitness (log2 ratio) -2 -1 0 1 2at 122.090 kb on + strand, within H281DRAFT_05845at 122.090 kb on + strand, within H281DRAFT_05845at 122.090 kb on + strand, within H281DRAFT_05845at 122.091 kb on - strand, within H281DRAFT_05845at 122.114 kb on - strand, within H281DRAFT_05845at 122.117 kb on - strand, within H281DRAFT_05845at 122.143 kb on + strand, within H281DRAFT_05845at 122.143 kb on + strand, within H281DRAFT_05845at 122.143 kb on + strand, within H281DRAFT_05845at 122.144 kb on - strand, within H281DRAFT_05845at 122.164 kb on + strand, within H281DRAFT_05845at 122.241 kb on - strand, within H281DRAFT_05845at 122.281 kb on + strand, within H281DRAFT_05845at 122.281 kb on + strand, within H281DRAFT_05845at 122.282 kb on - strand, within H281DRAFT_05845at 122.282 kb on - strand, within H281DRAFT_05845at 122.314 kb on + strand, within H281DRAFT_05845at 122.521 kb on + strandat 122.522 kb on - strandat 122.561 kb on - strandat 122.561 kb on - strandat 122.561 kb on - strandat 122.565 kb on - strandat 122.730 kb on + strandat 122.730 kb on + strandat 122.730 kb on + strandat 122.731 kb on - strandat 122.731 kb on - strandat 122.731 kb on - strandat 122.731 kb on - strandat 122.731 kb on - strandat 122.736 kb on - strandat 122.748 kb on + strandat 122.840 kb on - strandat 122.884 kb on + strandat 122.885 kb on - strandat 122.885 kb on - strandat 122.885 kb on - strandat 122.937 kb on - strandat 122.971 kb on + strandat 123.018 kb on - strandat 123.044 kb on - strandat 123.053 kb on + strandat 123.054 kb on - strandat 123.080 kb on + strandat 123.080 kb on + strandat 123.080 kb on + strandat 123.081 kb on - strandat 123.081 kb on - strandat 123.081 kb on - strandat 123.335 kb on + strand, within H281DRAFT_05846at 123.336 kb on - strand, within H281DRAFT_05846at 123.336 kb on - strand, within H281DRAFT_05846at 123.361 kb on + strand, within H281DRAFT_05846at 123.361 kb on + strand, within H281DRAFT_05846at 123.362 kb on - strand, within H281DRAFT_05846at 123.441 kb on + strand, within H281DRAFT_05846at 123.441 kb on + strand, within H281DRAFT_05846at 123.442 kb on - strand, within H281DRAFT_05846at 123.578 kb on + strand, within H281DRAFT_05846at 123.578 kb on + strand, within H281DRAFT_05846at 123.579 kb on - strand, within H281DRAFT_05846at 123.579 kb on - strand, within H281DRAFT_05846at 123.579 kb on - strand, within H281DRAFT_05846at 123.998 kb on + strand, within H281DRAFT_05846at 123.998 kb on + strand, within H281DRAFT_05846at 124.031 kb on + strand, within H281DRAFT_05846at 124.146 kb on - strand, within H281DRAFT_05846at 124.419 kb on - strand, within H281DRAFT_05846at 124.690 kb on + strand, within H281DRAFT_05846at 124.694 kb on + strand, within H281DRAFT_05846at 124.694 kb on + strand, within H281DRAFT_05846at 124.694 kb on + strand, within H281DRAFT_05846at 124.694 kb on + strand, within H281DRAFT_05846at 124.695 kb on - strand, within H281DRAFT_05846at 124.695 kb on - strand, within H281DRAFT_05846at 124.695 kb on - strand, within H281DRAFT_05846at 125.018 kb on + strandat 125.019 kb on - strandat 125.019 kb on - strandat 125.184 kb on - strandat 125.184 kb on - strandat 125.666 kb on + strandat 125.666 kb on + strandat 125.667 kb on - strandat 125.667 kb on - strandat 125.667 kb on - strandat 125.667 kb on - strandat 125.730 kb on + strand, within H281DRAFT_05847at 125.731 kb on - strand, within H281DRAFT_05847at 125.792 kb on + strand, within H281DRAFT_05847at 125.810 kb on + strand, within H281DRAFT_05847at 125.810 kb on + strand, within H281DRAFT_05847at 125.811 kb on - strand, within H281DRAFT_05847at 125.811 kb on - strand, within H281DRAFT_05847at 125.823 kb on - strand, within H281DRAFT_05847at 125.945 kb on + strand, within H281DRAFT_05847at 125.946 kb on - strand, within H281DRAFT_05847at 125.972 kb on + strand, within H281DRAFT_05847at 126.015 kb on + strand, within H281DRAFT_05847at 126.015 kb on + strand, within H281DRAFT_05847at 126.016 kb on - strand, within H281DRAFT_05847at 126.081 kb on - strand, within H281DRAFT_05847at 126.081 kb on - strand, within H281DRAFT_05847at 126.171 kb on + strand, within H281DRAFT_05847

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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122,090 + H281DRAFT_05845 0.57 +0.3
122,090 + H281DRAFT_05845 0.57 -0.1
122,090 + H281DRAFT_05845 0.57 +1.0
122,091 - H281DRAFT_05845 0.57 -0.1
122,114 - H281DRAFT_05845 0.58 +0.9
122,117 - H281DRAFT_05845 0.59 -0.7
122,143 + H281DRAFT_05845 0.61 +2.1
122,143 + H281DRAFT_05845 0.61 +0.3
122,143 + H281DRAFT_05845 0.61 -0.2
122,144 - H281DRAFT_05845 0.61 +0.9
122,164 + H281DRAFT_05845 0.63 +1.4
122,241 - H281DRAFT_05845 0.69 -2.6
122,281 + H281DRAFT_05845 0.72 -0.0
122,281 + H281DRAFT_05845 0.72 -1.8
122,282 - H281DRAFT_05845 0.72 +0.7
122,282 - H281DRAFT_05845 0.72 +0.4
122,314 + H281DRAFT_05845 0.75 -0.3
122,521 + -0.1
122,522 - -0.2
122,561 - -0.7
122,561 - +0.1
122,561 - +0.9
122,565 - -0.9
122,730 + +0.3
122,730 + -0.8
122,730 + -1.3
122,731 - -0.2
122,731 - +0.1
122,731 - +0.3
122,731 - +0.5
122,731 - +0.2
122,736 - +0.6
122,748 + -0.4
122,840 - -0.4
122,884 + +0.5
122,885 - -0.4
122,885 - +0.6
122,885 - -1.9
122,937 - -0.1
122,971 + +0.3
123,018 - +0.5
123,044 - +0.2
123,053 + -0.1
123,054 - +0.4
123,080 + -1.0
123,080 + +1.2
123,080 + +0.1
123,081 - +0.4
123,081 - +1.4
123,081 - +0.7
123,335 + H281DRAFT_05846 0.19 +0.2
123,336 - H281DRAFT_05846 0.19 +1.0
123,336 - H281DRAFT_05846 0.19 -0.1
123,361 + H281DRAFT_05846 0.20 -0.4
123,361 + H281DRAFT_05846 0.20 -0.5
123,362 - H281DRAFT_05846 0.20 +0.2
123,441 + H281DRAFT_05846 0.24 +0.7
123,441 + H281DRAFT_05846 0.24 +0.8
123,442 - H281DRAFT_05846 0.24 +0.7
123,578 + H281DRAFT_05846 0.30 +1.0
123,578 + H281DRAFT_05846 0.30 -0.8
123,579 - H281DRAFT_05846 0.30 +0.9
123,579 - H281DRAFT_05846 0.30 -0.4
123,579 - H281DRAFT_05846 0.30 +0.8
123,998 + H281DRAFT_05846 0.48 +1.5
123,998 + H281DRAFT_05846 0.48 +0.1
124,031 + H281DRAFT_05846 0.49 -0.1
124,146 - H281DRAFT_05846 0.54 +0.4
124,419 - H281DRAFT_05846 0.66 +1.7
124,690 + H281DRAFT_05846 0.78 +0.7
124,694 + H281DRAFT_05846 0.78 +0.2
124,694 + H281DRAFT_05846 0.78 +0.7
124,694 + H281DRAFT_05846 0.78 +0.9
124,694 + H281DRAFT_05846 0.78 +1.7
124,695 - H281DRAFT_05846 0.78 +0.5
124,695 - H281DRAFT_05846 0.78 +0.9
124,695 - H281DRAFT_05846 0.78 +0.7
125,018 + +0.6
125,019 - -0.2
125,019 - +0.5
125,184 - +0.6
125,184 - -0.6
125,666 + +1.0
125,666 + +0.2
125,667 - +0.6
125,667 - -1.2
125,667 - -0.1
125,667 - +0.5
125,730 + H281DRAFT_05847 0.11 -0.5
125,731 - H281DRAFT_05847 0.11 -1.0
125,792 + H281DRAFT_05847 0.13 +1.0
125,810 + H281DRAFT_05847 0.13 +0.3
125,810 + H281DRAFT_05847 0.13 -1.9
125,811 - H281DRAFT_05847 0.13 -0.8
125,811 - H281DRAFT_05847 0.13 +0.4
125,823 - H281DRAFT_05847 0.13 +0.7
125,945 + H281DRAFT_05847 0.17 -0.1
125,946 - H281DRAFT_05847 0.17 +0.6
125,972 + H281DRAFT_05847 0.18 +0.2
126,015 + H281DRAFT_05847 0.19 +1.3
126,015 + H281DRAFT_05847 0.19 -0.5
126,016 - H281DRAFT_05847 0.19 +0.1
126,081 - H281DRAFT_05847 0.21 +0.8
126,081 - H281DRAFT_05847 0.21 -0.2
126,171 + H281DRAFT_05847 0.23 +0.1

Or see this region's nucleotide sequence