Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05834 and H281DRAFT_05835 are separated by 133 nucleotides H281DRAFT_05835 and H281DRAFT_05836 are separated by 67 nucleotides H281DRAFT_05836 and H281DRAFT_05837 are separated by 251 nucleotides
H281DRAFT_05834: H281DRAFT_05834 - hypothetical protein, at 109,596 to 110,402
_05834
H281DRAFT_05835: H281DRAFT_05835 - 3-hydroxyisobutyrate dehydrogenase, at 110,536 to 111,405
_05835
H281DRAFT_05836: H281DRAFT_05836 - Threonine/homoserine/homoserine lactone efflux protein, at 111,473 to 112,120
_05836
H281DRAFT_05837: H281DRAFT_05837 - outer membrane protein, at 112,372 to 113,196
_05837
Position (kb)
110
111
112 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 109.538 kb on - strand at 109.538 kb on - strand at 109.538 kb on - strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.542 kb on - strand at 109.542 kb on - strand at 109.542 kb on - strand at 109.555 kb on - strand at 109.555 kb on - strand at 109.555 kb on - strand at 109.845 kb on + strand, within H281DRAFT_05834 at 109.845 kb on + strand, within H281DRAFT_05834 at 109.846 kb on - strand, within H281DRAFT_05834 at 109.930 kb on + strand, within H281DRAFT_05834 at 109.930 kb on + strand, within H281DRAFT_05834 at 109.931 kb on - strand, within H281DRAFT_05834 at 110.033 kb on - strand, within H281DRAFT_05834 at 110.044 kb on + strand, within H281DRAFT_05834 at 110.044 kb on + strand, within H281DRAFT_05834 at 110.051 kb on + strand, within H281DRAFT_05834 at 110.250 kb on + strand, within H281DRAFT_05834 at 110.250 kb on + strand, within H281DRAFT_05834 at 110.412 kb on - strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.484 kb on + strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.485 kb on - strand at 110.504 kb on + strand at 110.505 kb on - strand at 110.518 kb on + strand at 110.519 kb on - strand at 110.519 kb on - strand at 110.612 kb on + strand at 110.612 kb on + strand at 110.612 kb on + strand at 110.612 kb on + strand at 110.612 kb on + strand at 110.613 kb on - strand at 110.613 kb on - strand at 110.618 kb on + strand at 110.618 kb on + strand at 110.618 kb on + strand at 110.619 kb on - strand at 110.619 kb on - strand at 110.619 kb on - strand at 110.869 kb on + strand, within H281DRAFT_05835 at 110.870 kb on - strand, within H281DRAFT_05835 at 111.181 kb on + strand, within H281DRAFT_05835 at 111.181 kb on + strand, within H281DRAFT_05835 at 111.209 kb on - strand, within H281DRAFT_05835 at 111.445 kb on + strand at 111.445 kb on + strand at 111.445 kb on + strand at 111.445 kb on + strand at 111.446 kb on - strand at 111.446 kb on - strand at 111.484 kb on + strand at 111.484 kb on + strand at 111.484 kb on + strand at 111.484 kb on + strand at 111.484 kb on + strand at 111.485 kb on - strand at 111.587 kb on - strand, within H281DRAFT_05836 at 111.725 kb on + strand, within H281DRAFT_05836 at 111.725 kb on + strand, within H281DRAFT_05836 at 111.726 kb on - strand, within H281DRAFT_05836 at 111.729 kb on + strand, within H281DRAFT_05836 at 111.729 kb on + strand, within H281DRAFT_05836 at 111.729 kb on + strand, within H281DRAFT_05836 at 111.729 kb on + strand, within H281DRAFT_05836 at 111.987 kb on - strand, within H281DRAFT_05836 at 112.108 kb on - strand at 112.218 kb on - strand at 112.219 kb on + strand at 112.220 kb on - strand at 112.220 kb on - strand at 112.274 kb on - strand at 112.312 kb on - strand at 112.380 kb on + strand at 112.381 kb on - strand at 112.381 kb on - strand at 112.382 kb on + strand at 112.382 kb on + strand at 112.382 kb on + strand at 112.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 109,538 - +1.4 109,538 - +0.8 109,538 - -0.5 109,541 + -0.1 109,541 + +0.1 109,541 + +0.1 109,541 + -0.3 109,541 + -0.8 109,541 + -0.9 109,542 - +0.8 109,542 - -0.5 109,542 - -0.6 109,555 - -0.2 109,555 - +0.1 109,555 - +0.8 109,845 + H281DRAFT_05834 0.31 -0.3 109,845 + H281DRAFT_05834 0.31 -0.9 109,846 - H281DRAFT_05834 0.31 -0.7 109,930 + H281DRAFT_05834 0.41 +0.5 109,930 + H281DRAFT_05834 0.41 -0.0 109,931 - H281DRAFT_05834 0.42 -1.0 110,033 - H281DRAFT_05834 0.54 -0.1 110,044 + H281DRAFT_05834 0.56 -0.7 110,044 + H281DRAFT_05834 0.56 -0.5 110,051 + H281DRAFT_05834 0.56 -0.4 110,250 + H281DRAFT_05834 0.81 -0.1 110,250 + H281DRAFT_05834 0.81 +0.8 110,412 - +0.5 110,484 + -0.4 110,484 + -1.9 110,484 + -0.4 110,484 + +0.8 110,484 + +0.2 110,484 + +0.6 110,484 + +0.1 110,484 + +0.2 110,484 + +2.1 110,484 + -2.2 110,484 + -0.3 110,485 - -0.7 110,485 - +0.0 110,485 - -0.2 110,485 - -1.0 110,485 - +1.1 110,485 - +0.2 110,485 - +0.1 110,485 - -0.4 110,485 - +0.4 110,485 - -0.9 110,485 - +0.3 110,485 - +0.3 110,485 - -0.3 110,485 - -0.6 110,504 + +0.4 110,505 - +0.1 110,518 + +0.9 110,519 - -0.5 110,519 - +0.1 110,612 + -0.3 110,612 + +0.0 110,612 + -0.2 110,612 + -0.7 110,612 + +2.1 110,613 - +0.8 110,613 - -2.4 110,618 + -0.6 110,618 + +0.3 110,618 + +0.5 110,619 - +0.2 110,619 - -1.5 110,619 - -0.2 110,869 + H281DRAFT_05835 0.38 +1.7 110,870 - H281DRAFT_05835 0.38 +0.4 111,181 + H281DRAFT_05835 0.74 +0.1 111,181 + H281DRAFT_05835 0.74 +0.0 111,209 - H281DRAFT_05835 0.77 +0.2 111,445 + +0.2 111,445 + +0.6 111,445 + +0.6 111,445 + +0.4 111,446 - +0.2 111,446 - -0.1 111,484 + +0.9 111,484 + +0.2 111,484 + -0.0 111,484 + -0.5 111,484 + +0.0 111,485 - +0.6 111,587 - H281DRAFT_05836 0.18 -1.6 111,725 + H281DRAFT_05836 0.39 +0.6 111,725 + H281DRAFT_05836 0.39 +1.9 111,726 - H281DRAFT_05836 0.39 +0.0 111,729 + H281DRAFT_05836 0.40 +1.2 111,729 + H281DRAFT_05836 0.40 -0.3 111,729 + H281DRAFT_05836 0.40 +2.2 111,729 + H281DRAFT_05836 0.40 -0.6 111,987 - H281DRAFT_05836 0.79 +0.3 112,108 - +0.0 112,218 - +0.0 112,219 + +4.7 112,220 - +3.6 112,220 - +0.1 112,274 - +0.5 112,312 - +0.4 112,380 + +0.9 112,381 - +0.6 112,381 - -0.4 112,382 + +1.7 112,382 + +0.2 112,382 + +1.3 112,383 - -0.8
Or see this region's nucleotide sequence