Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05642

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05640 and H281DRAFT_05641 are separated by 93 nucleotidesH281DRAFT_05641 and H281DRAFT_05642 overlap by 4 nucleotidesH281DRAFT_05642 and H281DRAFT_05643 are separated by 88 nucleotidesH281DRAFT_05643 and H281DRAFT_05644 are separated by 11 nucleotides H281DRAFT_05640: H281DRAFT_05640 - thiamine-phosphate diphosphorylase, at 64,159 to 65,271 _05640 H281DRAFT_05641: H281DRAFT_05641 - phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein, at 65,365 to 66,186 _05641 H281DRAFT_05642: H281DRAFT_05642 - phospholipid/cholesterol/gamma-HCH transport system permease protein, at 66,183 to 66,962 _05642 H281DRAFT_05643: H281DRAFT_05643 - phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein, at 67,051 to 67,581 _05643 H281DRAFT_05644: H281DRAFT_05644 - phospholipid-binding lipoprotein MlaA, at 67,593 to 68,648 _05644 Position (kb) 66 67Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 65.330 kb on + strandat 65.330 kb on + strandat 65.331 kb on - strandat 65.347 kb on + strandat 65.387 kb on + strandat 65.387 kb on + strandat 65.866 kb on + strand, within H281DRAFT_05641at 65.866 kb on + strand, within H281DRAFT_05641at 65.866 kb on + strand, within H281DRAFT_05641at 65.867 kb on - strand, within H281DRAFT_05641at 66.004 kb on + strand, within H281DRAFT_05641at 66.004 kb on + strand, within H281DRAFT_05641at 66.004 kb on + strand, within H281DRAFT_05641at 66.004 kb on + strand, within H281DRAFT_05641at 66.005 kb on - strand, within H281DRAFT_05641at 66.011 kb on - strandat 66.094 kb on - strand, within H281DRAFT_05641at 66.334 kb on + strand, within H281DRAFT_05642at 66.335 kb on - strand, within H281DRAFT_05642at 66.339 kb on - strand, within H281DRAFT_05642at 66.339 kb on - strand, within H281DRAFT_05642at 66.343 kb on - strand, within H281DRAFT_05642at 66.408 kb on + strand, within H281DRAFT_05642at 66.409 kb on - strand, within H281DRAFT_05642at 66.694 kb on - strand, within H281DRAFT_05642at 66.847 kb on - strand, within H281DRAFT_05642at 66.903 kb on + strandat 66.960 kb on + strandat 67.016 kb on + strandat 67.223 kb on + strand, within H281DRAFT_05643at 67.283 kb on - strand, within H281DRAFT_05643at 67.283 kb on - strand, within H281DRAFT_05643at 67.318 kb on + strand, within H281DRAFT_05643at 67.335 kb on + strand, within H281DRAFT_05643at 67.336 kb on - strand, within H281DRAFT_05643at 67.336 kb on - strand, within H281DRAFT_05643at 67.336 kb on - strand, within H281DRAFT_05643at 67.336 kb on - strand, within H281DRAFT_05643at 67.378 kb on + strand, within H281DRAFT_05643at 67.379 kb on - strand, within H281DRAFT_05643at 67.379 kb on - strand, within H281DRAFT_05643at 67.379 kb on - strand, within H281DRAFT_05643at 67.416 kb on + strand, within H281DRAFT_05643at 67.417 kb on - strand, within H281DRAFT_05643at 67.487 kb on - strand, within H281DRAFT_05643at 67.489 kb on - strand, within H281DRAFT_05643at 67.489 kb on - strand, within H281DRAFT_05643at 67.579 kb on + strandat 67.592 kb on - strandat 67.674 kb on - strandat 67.785 kb on + strand, within H281DRAFT_05644at 67.789 kb on + strand, within H281DRAFT_05644at 67.789 kb on + strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.826 kb on + strand, within H281DRAFT_05644at 67.826 kb on + strand, within H281DRAFT_05644at 67.827 kb on - strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.855 kb on - strand, within H281DRAFT_05644at 67.855 kb on - strand, within H281DRAFT_05644

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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65,330 + +0.6
65,330 + +0.3
65,331 - +4.5
65,347 + -0.5
65,387 + +3.1
65,387 + +4.1
65,866 + H281DRAFT_05641 0.61 +2.7
65,866 + H281DRAFT_05641 0.61 +3.9
65,866 + H281DRAFT_05641 0.61 +4.6
65,867 - H281DRAFT_05641 0.61 +3.5
66,004 + H281DRAFT_05641 0.78 +2.8
66,004 + H281DRAFT_05641 0.78 +3.2
66,004 + H281DRAFT_05641 0.78 +5.0
66,004 + H281DRAFT_05641 0.78 +3.7
66,005 - H281DRAFT_05641 0.78 +3.8
66,011 - +4.6
66,094 - H281DRAFT_05641 0.89 +2.9
66,334 + H281DRAFT_05642 0.19 +1.6
66,335 - H281DRAFT_05642 0.19 +4.3
66,339 - H281DRAFT_05642 0.20 +3.3
66,339 - H281DRAFT_05642 0.20 +2.5
66,343 - H281DRAFT_05642 0.21 +3.4
66,408 + H281DRAFT_05642 0.29 +2.7
66,409 - H281DRAFT_05642 0.29 +3.1
66,694 - H281DRAFT_05642 0.66 +3.6
66,847 - H281DRAFT_05642 0.85 +3.1
66,903 + +1.9
66,960 + +2.3
67,016 + +1.2
67,223 + H281DRAFT_05643 0.32 +3.2
67,283 - H281DRAFT_05643 0.44 +3.4
67,283 - H281DRAFT_05643 0.44 +3.1
67,318 + H281DRAFT_05643 0.50 +3.7
67,335 + H281DRAFT_05643 0.53 +5.5
67,336 - H281DRAFT_05643 0.54 +2.9
67,336 - H281DRAFT_05643 0.54 +3.9
67,336 - H281DRAFT_05643 0.54 +3.9
67,336 - H281DRAFT_05643 0.54 +3.4
67,378 + H281DRAFT_05643 0.62 +3.4
67,379 - H281DRAFT_05643 0.62 +3.5
67,379 - H281DRAFT_05643 0.62 +2.9
67,379 - H281DRAFT_05643 0.62 +3.2
67,416 + H281DRAFT_05643 0.69 +3.6
67,417 - H281DRAFT_05643 0.69 +3.1
67,487 - H281DRAFT_05643 0.82 +2.8
67,489 - H281DRAFT_05643 0.82 +2.8
67,489 - H281DRAFT_05643 0.82 +3.5
67,579 + -0.8
67,592 - +1.8
67,674 - +2.3
67,785 + H281DRAFT_05644 0.18 -0.4
67,789 + H281DRAFT_05644 0.19 +0.1
67,789 + H281DRAFT_05644 0.19 -0.6
67,790 - H281DRAFT_05644 0.19 +1.2
67,790 - H281DRAFT_05644 0.19 +2.0
67,790 - H281DRAFT_05644 0.19 +1.2
67,790 - H281DRAFT_05644 0.19 +0.3
67,790 - H281DRAFT_05644 0.19 +1.4
67,790 - H281DRAFT_05644 0.19 +1.6
67,790 - H281DRAFT_05644 0.19 +1.2
67,826 + H281DRAFT_05644 0.22 -0.1
67,826 + H281DRAFT_05644 0.22 +0.3
67,827 - H281DRAFT_05644 0.22 +1.6
67,854 + H281DRAFT_05644 0.25 -0.4
67,854 + H281DRAFT_05644 0.25 +0.2
67,854 + H281DRAFT_05644 0.25 +0.2
67,854 + H281DRAFT_05644 0.25 +0.2
67,855 - H281DRAFT_05644 0.25 +1.9
67,855 - H281DRAFT_05644 0.25 +1.3

Or see this region's nucleotide sequence