Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05411 and H281DRAFT_05412 are separated by 452 nucleotides H281DRAFT_05412 and H281DRAFT_05413 are separated by 264 nucleotides
H281DRAFT_05411: H281DRAFT_05411 - Predicted periplasmic or secreted lipoprotein, at 175,380 to 175,745
_05411
H281DRAFT_05412: H281DRAFT_05412 - DNA-3-methyladenine glycosylase, at 176,198 to 176,845
_05412
H281DRAFT_05413: H281DRAFT_05413 - protein of unknown function (DUF4148), at 177,110 to 177,454
_05413
Position (kb) 176
177 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 175.269 kb on - strand at 175.290 kb on - strand at 175.769 kb on - strand at 175.769 kb on - strand at 175.804 kb on - strand at 176.099 kb on + strand at 176.100 kb on - strand at 176.110 kb on + strand at 176.110 kb on + strand at 176.317 kb on + strand, within H281DRAFT_05412 at 176.318 kb on - strand, within H281DRAFT_05412 at 176.349 kb on - strand, within H281DRAFT_05412 at 176.396 kb on + strand, within H281DRAFT_05412 at 176.432 kb on + strand, within H281DRAFT_05412 at 176.433 kb on - strand, within H281DRAFT_05412 at 176.448 kb on - strand, within H281DRAFT_05412 at 176.448 kb on - strand, within H281DRAFT_05412 at 176.454 kb on + strand, within H281DRAFT_05412 at 176.459 kb on + strand, within H281DRAFT_05412 at 176.460 kb on - strand at 176.460 kb on - strand, within H281DRAFT_05412 at 176.470 kb on + strand, within H281DRAFT_05412 at 176.471 kb on - strand, within H281DRAFT_05412 at 176.609 kb on - strand, within H281DRAFT_05412 at 176.609 kb on - strand, within H281DRAFT_05412 at 176.609 kb on - strand, within H281DRAFT_05412 at 176.873 kb on + strand at 176.873 kb on + strand at 176.878 kb on - strand at 176.878 kb on - strand at 176.926 kb on + strand at 176.927 kb on - strand at 176.996 kb on + strand at 176.996 kb on + strand at 176.997 kb on - strand at 176.997 kb on - strand at 176.997 kb on - strand at 176.997 kb on - strand at 177.001 kb on - strand at 177.001 kb on - strand at 177.001 kb on - strand at 177.040 kb on + strand at 177.040 kb on + strand at 177.102 kb on + strand at 177.102 kb on + strand at 177.105 kb on + strand at 177.106 kb on - strand at 177.106 kb on - strand at 177.106 kb on - strand at 177.121 kb on + strand at 177.245 kb on + strand, within H281DRAFT_05413 at 177.246 kb on - strand, within H281DRAFT_05413 at 177.276 kb on - strand, within H281DRAFT_05413 at 177.419 kb on - strand, within H281DRAFT_05413 at 177.419 kb on - strand, within H281DRAFT_05413 at 177.419 kb on - strand, within H281DRAFT_05413 at 177.419 kb on - strand, within H281DRAFT_05413 at 177.440 kb on + strand at 177.453 kb on - strand at 177.453 kb on - strand at 177.453 kb on - strand at 177.522 kb on - strand at 177.611 kb on - strand at 177.769 kb on + strand at 177.770 kb on - strand at 177.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 175,269 - +0.8 175,290 - +0.5 175,769 - -1.2 175,769 - -0.6 175,804 - -0.1 176,099 + -1.1 176,100 - -0.6 176,110 + +0.6 176,110 + -0.1 176,317 + H281DRAFT_05412 0.18 -0.1 176,318 - H281DRAFT_05412 0.19 -0.5 176,349 - H281DRAFT_05412 0.23 +0.3 176,396 + H281DRAFT_05412 0.31 +0.9 176,432 + H281DRAFT_05412 0.36 +0.7 176,433 - H281DRAFT_05412 0.36 +0.4 176,448 - H281DRAFT_05412 0.39 +1.3 176,448 - H281DRAFT_05412 0.39 -2.5 176,454 + H281DRAFT_05412 0.40 -0.6 176,459 + H281DRAFT_05412 0.40 +0.6 176,460 - +2.8 176,460 - H281DRAFT_05412 0.40 +0.5 176,470 + H281DRAFT_05412 0.42 -0.3 176,471 - H281DRAFT_05412 0.42 +0.5 176,609 - H281DRAFT_05412 0.63 +1.0 176,609 - H281DRAFT_05412 0.63 +0.3 176,609 - H281DRAFT_05412 0.63 -0.2 176,873 + +1.0 176,873 + +0.1 176,878 - +0.9 176,878 - +0.6 176,926 + -0.1 176,927 - +0.1 176,996 + +0.8 176,996 + -1.0 176,997 - +0.4 176,997 - -1.0 176,997 - +0.7 176,997 - +0.8 177,001 - -0.2 177,001 - -0.7 177,001 - +1.1 177,040 + +0.8 177,040 + +0.6 177,102 + +0.4 177,102 + +0.2 177,105 + -1.2 177,106 - -0.4 177,106 - +0.7 177,106 - -0.1 177,121 + +0.0 177,245 + H281DRAFT_05413 0.39 -0.6 177,246 - H281DRAFT_05413 0.39 +0.2 177,276 - H281DRAFT_05413 0.48 -0.5 177,419 - H281DRAFT_05413 0.90 -0.8 177,419 - H281DRAFT_05413 0.90 +0.2 177,419 - H281DRAFT_05413 0.90 +1.1 177,419 - H281DRAFT_05413 0.90 +1.4 177,440 + +0.1 177,453 - +3.6 177,453 - +0.1 177,453 - +0.4 177,522 - -2.0 177,611 - +0.2 177,769 + -0.1 177,770 - +0.4 177,809 + -0.2
Or see this region's nucleotide sequence