Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05373 and H281DRAFT_05374 are separated by 54 nucleotides H281DRAFT_05374 and H281DRAFT_05375 are separated by 27 nucleotides H281DRAFT_05375 and H281DRAFT_05376 are separated by 245 nucleotides
H281DRAFT_05373: H281DRAFT_05373 - type VI secretion system protein ImpL, at 128,484 to 132,353
_05373
H281DRAFT_05374: H281DRAFT_05374 - hypothetical protein, at 132,408 to 132,599
_05374
H281DRAFT_05375: H281DRAFT_05375 - peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK, at 132,627 to 133,352
_05375
H281DRAFT_05376: H281DRAFT_05376 - hypothetical protein, at 133,598 to 134,572
_05376
Position (kb) 132
133
134 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.807 kb on + strand, within H281DRAFT_05373 at 131.874 kb on + strand, within H281DRAFT_05373 at 131.875 kb on - strand, within H281DRAFT_05373 at 131.965 kb on + strand, within H281DRAFT_05373 at 131.965 kb on + strand, within H281DRAFT_05373 at 131.966 kb on - strand, within H281DRAFT_05373 at 131.966 kb on - strand, within H281DRAFT_05373 at 131.981 kb on - strand at 131.981 kb on - strand at 131.981 kb on - strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.353 kb on + strand at 132.353 kb on + strand at 132.354 kb on - strand at 132.488 kb on + strand, within H281DRAFT_05374 at 132.515 kb on + strand, within H281DRAFT_05374 at 132.516 kb on - strand, within H281DRAFT_05374 at 132.516 kb on - strand, within H281DRAFT_05374 at 132.540 kb on + strand, within H281DRAFT_05374 at 132.540 kb on + strand, within H281DRAFT_05374 at 132.540 kb on + strand, within H281DRAFT_05374 at 132.581 kb on + strand at 132.621 kb on + strand at 132.628 kb on + strand at 132.628 kb on + strand at 132.739 kb on + strand, within H281DRAFT_05375 at 132.741 kb on + strand, within H281DRAFT_05375 at 132.741 kb on + strand, within H281DRAFT_05375 at 132.741 kb on + strand, within H281DRAFT_05375 at 132.838 kb on + strand, within H281DRAFT_05375 at 132.838 kb on + strand, within H281DRAFT_05375 at 132.937 kb on + strand, within H281DRAFT_05375 at 133.217 kb on + strand, within H281DRAFT_05375 at 133.217 kb on + strand, within H281DRAFT_05375 at 133.229 kb on + strand, within H281DRAFT_05375 at 133.229 kb on + strand, within H281DRAFT_05375 at 133.447 kb on + strand at 133.461 kb on + strand at 133.501 kb on + strand at 133.502 kb on - strand at 133.509 kb on - strand at 133.556 kb on + strand at 133.557 kb on - strand at 133.559 kb on + strand at 133.658 kb on - strand at 133.658 kb on - strand at 133.727 kb on - strand, within H281DRAFT_05376 at 133.774 kb on - strand, within H281DRAFT_05376
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 131,807 + H281DRAFT_05373 0.86 -1.2 131,874 + H281DRAFT_05373 0.88 +0.2 131,875 - H281DRAFT_05373 0.88 -0.9 131,965 + H281DRAFT_05373 0.90 -1.0 131,965 + H281DRAFT_05373 0.90 +0.8 131,966 - H281DRAFT_05373 0.90 -0.4 131,966 - H281DRAFT_05373 0.90 -0.9 131,981 - +0.4 131,981 - +0.1 131,981 - -0.2 132,260 + -0.2 132,260 + -0.8 132,260 + +0.1 132,261 - +0.0 132,261 - -0.2 132,261 - -0.6 132,353 + +0.1 132,353 + -0.3 132,354 - +0.0 132,488 + H281DRAFT_05374 0.42 +0.2 132,515 + H281DRAFT_05374 0.56 +0.3 132,516 - H281DRAFT_05374 0.56 -0.0 132,516 - H281DRAFT_05374 0.56 +1.1 132,540 + H281DRAFT_05374 0.69 -0.9 132,540 + H281DRAFT_05374 0.69 -0.7 132,540 + H281DRAFT_05374 0.69 -0.3 132,581 + -1.6 132,621 + +0.3 132,628 + +0.0 132,628 + +0.1 132,739 + H281DRAFT_05375 0.15 -0.1 132,741 + H281DRAFT_05375 0.16 -0.1 132,741 + H281DRAFT_05375 0.16 +0.4 132,741 + H281DRAFT_05375 0.16 -0.4 132,838 + H281DRAFT_05375 0.29 +0.2 132,838 + H281DRAFT_05375 0.29 +0.8 132,937 + H281DRAFT_05375 0.43 +0.5 133,217 + H281DRAFT_05375 0.81 -0.6 133,217 + H281DRAFT_05375 0.81 -0.9 133,229 + H281DRAFT_05375 0.83 -1.0 133,229 + H281DRAFT_05375 0.83 -0.1 133,447 + -1.8 133,461 + -0.0 133,501 + -0.0 133,502 - +0.0 133,509 - +1.6 133,556 + +0.6 133,557 - -0.8 133,559 + +0.0 133,658 - -0.2 133,658 - +0.5 133,727 - H281DRAFT_05376 0.13 +1.8 133,774 - H281DRAFT_05376 0.18 +0.9
Or see this region's nucleotide sequence