Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05136

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05135 and H281DRAFT_05136 are separated by 394 nucleotidesH281DRAFT_05136 and H281DRAFT_05137 are separated by 10 nucleotides H281DRAFT_05135: H281DRAFT_05135 - MFS transporter, SHS family, lactate transporter, at 87,065 to 88,315 _05135 H281DRAFT_05136: H281DRAFT_05136 - response regulator receiver sensor signal transduction histidine kinase (EC 2.7.13.3), at 88,710 to 89,870 _05136 H281DRAFT_05137: H281DRAFT_05137 - Signal transduction histidine kinase, at 89,881 to 92,589 _05137 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1 2at 87.783 kb on + strand, within H281DRAFT_05135at 87.784 kb on - strand, within H281DRAFT_05135at 87.784 kb on - strand, within H281DRAFT_05135at 87.784 kb on - strand, within H281DRAFT_05135at 87.784 kb on - strand, within H281DRAFT_05135at 87.840 kb on + strand, within H281DRAFT_05135at 87.840 kb on + strand, within H281DRAFT_05135at 87.840 kb on + strand, within H281DRAFT_05135at 87.840 kb on + strand, within H281DRAFT_05135at 87.841 kb on - strand, within H281DRAFT_05135at 87.841 kb on - strand, within H281DRAFT_05135at 87.841 kb on - strand, within H281DRAFT_05135at 87.841 kb on - strand, within H281DRAFT_05135at 87.841 kb on - strand, within H281DRAFT_05135at 87.846 kb on + strand, within H281DRAFT_05135at 87.846 kb on + strand, within H281DRAFT_05135at 87.846 kb on + strand, within H281DRAFT_05135at 87.846 kb on + strand, within H281DRAFT_05135at 87.847 kb on - strand, within H281DRAFT_05135at 87.847 kb on - strand, within H281DRAFT_05135at 87.847 kb on - strand, within H281DRAFT_05135at 87.998 kb on + strand, within H281DRAFT_05135at 87.999 kb on - strand, within H281DRAFT_05135at 87.999 kb on - strand, within H281DRAFT_05135at 88.167 kb on - strand, within H281DRAFT_05135at 88.224 kb on - strandat 88.400 kb on - strandat 88.400 kb on - strandat 88.491 kb on - strandat 88.491 kb on - strandat 88.508 kb on - strandat 88.508 kb on - strandat 88.604 kb on + strandat 88.605 kb on - strandat 88.723 kb on + strandat 88.723 kb on + strandat 88.723 kb on + strandat 88.723 kb on + strandat 89.095 kb on - strandat 89.233 kb on - strand, within H281DRAFT_05136at 89.233 kb on - strand, within H281DRAFT_05136at 89.233 kb on - strand, within H281DRAFT_05136at 89.270 kb on + strand, within H281DRAFT_05136at 89.296 kb on - strand, within H281DRAFT_05136at 89.489 kb on + strand, within H281DRAFT_05136at 89.883 kb on - strandat 89.929 kb on - strandat 89.958 kb on + strandat 89.958 kb on + strandat 90.113 kb on + strandat 90.113 kb on + strandat 90.114 kb on - strandat 90.527 kb on + strand, within H281DRAFT_05137at 90.527 kb on + strand, within H281DRAFT_05137at 90.528 kb on - strand, within H281DRAFT_05137at 90.528 kb on - strand, within H281DRAFT_05137at 90.528 kb on - strand, within H281DRAFT_05137at 90.528 kb on - strand, within H281DRAFT_05137at 90.810 kb on - strand, within H281DRAFT_05137at 90.834 kb on - strand, within H281DRAFT_05137

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
remove
87,783 + H281DRAFT_05135 0.57 +1.0
87,784 - H281DRAFT_05135 0.57 +0.6
87,784 - H281DRAFT_05135 0.57 +0.8
87,784 - H281DRAFT_05135 0.57 -0.3
87,784 - H281DRAFT_05135 0.57 -0.5
87,840 + H281DRAFT_05135 0.62 -0.1
87,840 + H281DRAFT_05135 0.62 -1.8
87,840 + H281DRAFT_05135 0.62 +0.3
87,840 + H281DRAFT_05135 0.62 -0.9
87,841 - H281DRAFT_05135 0.62 +0.2
87,841 - H281DRAFT_05135 0.62 -0.1
87,841 - H281DRAFT_05135 0.62 +1.7
87,841 - H281DRAFT_05135 0.62 +0.3
87,841 - H281DRAFT_05135 0.62 -0.2
87,846 + H281DRAFT_05135 0.62 +0.5
87,846 + H281DRAFT_05135 0.62 +0.3
87,846 + H281DRAFT_05135 0.62 +0.0
87,846 + H281DRAFT_05135 0.62 -0.1
87,847 - H281DRAFT_05135 0.63 +1.8
87,847 - H281DRAFT_05135 0.63 -0.2
87,847 - H281DRAFT_05135 0.63 +1.6
87,998 + H281DRAFT_05135 0.75 +0.8
87,999 - H281DRAFT_05135 0.75 +0.1
87,999 - H281DRAFT_05135 0.75 +0.4
88,167 - H281DRAFT_05135 0.88 -0.3
88,224 - -0.4
88,400 - +0.2
88,400 - +1.1
88,491 - +0.4
88,491 - +0.2
88,508 - -0.3
88,508 - -1.8
88,604 + -0.7
88,605 - +0.6
88,723 + -0.7
88,723 + -0.1
88,723 + -1.0
88,723 + -1.2
89,095 - +0.4
89,233 - H281DRAFT_05136 0.45 +0.8
89,233 - H281DRAFT_05136 0.45 -0.1
89,233 - H281DRAFT_05136 0.45 +0.0
89,270 + H281DRAFT_05136 0.48 +0.1
89,296 - H281DRAFT_05136 0.50 +0.6
89,489 + H281DRAFT_05136 0.67 -0.1
89,883 - -0.7
89,929 - +0.1
89,958 + -0.9
89,958 + +0.1
90,113 + +0.2
90,113 + +0.9
90,114 - +1.5
90,527 + H281DRAFT_05137 0.24 +0.6
90,527 + H281DRAFT_05137 0.24 +0.9
90,528 - H281DRAFT_05137 0.24 +0.3
90,528 - H281DRAFT_05137 0.24 -1.6
90,528 - H281DRAFT_05137 0.24 -0.5
90,528 - H281DRAFT_05137 0.24 +0.8
90,810 - H281DRAFT_05137 0.34 +0.0
90,834 - H281DRAFT_05137 0.35 -0.2

Or see this region's nucleotide sequence