Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05132

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05131 and H281DRAFT_05132 are separated by 2 nucleotidesH281DRAFT_05132 and H281DRAFT_05133 are separated by 116 nucleotides H281DRAFT_05131: H281DRAFT_05131 - Acyl dehydratase, at 80,871 to 81,806 _05131 H281DRAFT_05132: H281DRAFT_05132 - 3-oxoacyl-[acyl-carrier protein] reductase, at 81,809 to 83,260 _05132 H281DRAFT_05133: H281DRAFT_05133 - acyl-CoA dehydrogenase, at 83,377 to 85,875 _05133 Position (kb) 81 82 83 84Strain fitness (log2 ratio) -1 0 1at 80.812 kb on + strandat 80.812 kb on + strandat 81.154 kb on + strand, within H281DRAFT_05131at 81.416 kb on - strand, within H281DRAFT_05131at 81.535 kb on + strand, within H281DRAFT_05131at 81.810 kb on + strandat 81.810 kb on + strandat 81.811 kb on - strandat 81.811 kb on - strandat 81.811 kb on - strandat 82.096 kb on - strand, within H281DRAFT_05132at 82.650 kb on + strand, within H281DRAFT_05132at 82.650 kb on + strand, within H281DRAFT_05132at 82.650 kb on + strand, within H281DRAFT_05132at 82.651 kb on - strand, within H281DRAFT_05132at 82.651 kb on - strand, within H281DRAFT_05132at 82.720 kb on - strand, within H281DRAFT_05132at 82.849 kb on + strand, within H281DRAFT_05132at 83.248 kb on - strandat 83.261 kb on - strandat 83.261 kb on - strandat 83.711 kb on + strand, within H281DRAFT_05133at 83.712 kb on - strand, within H281DRAFT_05133at 84.125 kb on + strand, within H281DRAFT_05133at 84.125 kb on + strand, within H281DRAFT_05133

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
remove
80,812 + +1.2
80,812 + -0.8
81,154 + H281DRAFT_05131 0.30 +1.0
81,416 - H281DRAFT_05131 0.58 +0.4
81,535 + H281DRAFT_05131 0.71 +0.7
81,810 + +0.2
81,810 + -0.1
81,811 - +0.3
81,811 - +0.5
81,811 - +0.1
82,096 - H281DRAFT_05132 0.20 +0.3
82,650 + H281DRAFT_05132 0.58 -0.4
82,650 + H281DRAFT_05132 0.58 +1.1
82,650 + H281DRAFT_05132 0.58 +0.5
82,651 - H281DRAFT_05132 0.58 -0.1
82,651 - H281DRAFT_05132 0.58 +0.6
82,720 - H281DRAFT_05132 0.63 -0.5
82,849 + H281DRAFT_05132 0.72 +0.4
83,248 - +0.9
83,261 - -0.3
83,261 - +1.3
83,711 + H281DRAFT_05133 0.13 +1.3
83,712 - H281DRAFT_05133 0.13 +1.5
84,125 + H281DRAFT_05133 0.30 +0.6
84,125 + H281DRAFT_05133 0.30 -1.2

Or see this region's nucleotide sequence