Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05130

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05129 and H281DRAFT_05130 are separated by 91 nucleotidesH281DRAFT_05130 and H281DRAFT_05131 are separated by 80 nucleotides H281DRAFT_05129: H281DRAFT_05129 - long-chain acyl-CoA synthetase, at 77,565 to 79,397 _05129 H281DRAFT_05130: H281DRAFT_05130 - 3-ketoacyl-CoA thiolase, at 79,489 to 80,790 _05130 H281DRAFT_05131: H281DRAFT_05131 - Acyl dehydratase, at 80,871 to 81,806 _05131 Position (kb) 79 80 81Strain fitness (log2 ratio) -1 0 1 2 3at 78.622 kb on + strand, within H281DRAFT_05129at 78.677 kb on + strand, within H281DRAFT_05129at 78.678 kb on - strand, within H281DRAFT_05129at 78.678 kb on - strand, within H281DRAFT_05129at 78.678 kb on - strand, within H281DRAFT_05129at 79.019 kb on + strand, within H281DRAFT_05129at 79.114 kb on + strand, within H281DRAFT_05129at 79.114 kb on + strandat 79.141 kb on + strand, within H281DRAFT_05129at 79.141 kb on + strand, within H281DRAFT_05129at 79.142 kb on - strand, within H281DRAFT_05129at 79.142 kb on - strand, within H281DRAFT_05129at 79.201 kb on + strand, within H281DRAFT_05129at 79.280 kb on + strandat 80.526 kb on - strand, within H281DRAFT_05130at 80.708 kb on + strandat 80.812 kb on + strandat 80.812 kb on + strandat 81.154 kb on + strand, within H281DRAFT_05131at 81.416 kb on - strand, within H281DRAFT_05131at 81.535 kb on + strand, within H281DRAFT_05131

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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78,622 + H281DRAFT_05129 0.58 -0.2
78,677 + H281DRAFT_05129 0.61 +0.7
78,678 - H281DRAFT_05129 0.61 -1.3
78,678 - H281DRAFT_05129 0.61 +2.8
78,678 - H281DRAFT_05129 0.61 +0.2
79,019 + H281DRAFT_05129 0.79 +0.2
79,114 + H281DRAFT_05129 0.85 +0.2
79,114 + +0.8
79,141 + H281DRAFT_05129 0.86 +0.7
79,141 + H281DRAFT_05129 0.86 -0.7
79,142 - H281DRAFT_05129 0.86 +0.7
79,142 - H281DRAFT_05129 0.86 -0.6
79,201 + H281DRAFT_05129 0.89 +0.4
79,280 + +1.0
80,526 - H281DRAFT_05130 0.80 +1.8
80,708 + +0.0
80,812 + +1.2
80,812 + -0.8
81,154 + H281DRAFT_05131 0.30 +1.0
81,416 - H281DRAFT_05131 0.58 +0.4
81,535 + H281DRAFT_05131 0.71 +0.7

Or see this region's nucleotide sequence