Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05086 and H281DRAFT_05087 overlap by 4 nucleotides H281DRAFT_05087 and H281DRAFT_05088 are separated by 54 nucleotides H281DRAFT_05088 and H281DRAFT_05089 are separated by 4 nucleotides H281DRAFT_05089 and H281DRAFT_05090 overlap by 4 nucleotides
H281DRAFT_05086: H281DRAFT_05086 - DNA helicase/exodeoxyribonuclease V, beta subunit, at 26,981 to 30,682
_05086
H281DRAFT_05087: H281DRAFT_05087 - exodeoxyribonuclease V alpha subunit, at 30,679 to 33,003
_05087
H281DRAFT_05088: H281DRAFT_05088 - hypothetical protein, at 33,058 to 33,201
_05088
H281DRAFT_05089: H281DRAFT_05089 - ribosome-associated protein, at 33,206 to 33,610
_05089
H281DRAFT_05090: H281DRAFT_05090 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 33,607 to 34,932
_05090
Position (kb) 30
31
32
33
34 Strain fitness (log2 ratio) -1
0
1 at 30.476 kb on + strand at 31.261 kb on - strand, within H281DRAFT_05087 at 31.423 kb on - strand, within H281DRAFT_05087 at 31.647 kb on + strand, within H281DRAFT_05087 at 33.019 kb on - strand at 33.176 kb on - strand, within H281DRAFT_05088 at 33.176 kb on - strand, within H281DRAFT_05088 at 33.199 kb on + strand at 33.200 kb on - strand at 33.543 kb on + strand, within H281DRAFT_05089 at 33.544 kb on - strand, within H281DRAFT_05089 at 33.608 kb on + strand at 33.725 kb on + strand at 33.725 kb on + strand at 33.726 kb on - strand at 33.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 30,476 + -0.5 31,261 - H281DRAFT_05087 0.25 -0.0 31,423 - H281DRAFT_05087 0.32 -0.8 31,647 + H281DRAFT_05087 0.42 -0.9 33,019 - -0.2 33,176 - H281DRAFT_05088 0.82 +0.3 33,176 - H281DRAFT_05088 0.82 +0.2 33,199 + -0.2 33,200 - +0.5 33,543 + H281DRAFT_05089 0.83 +0.6 33,544 - H281DRAFT_05089 0.83 -0.6 33,608 + +0.1 33,725 + -0.6 33,725 + -0.1 33,726 - -0.2 33,726 - -0.8
Or see this region's nucleotide sequence