Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04838

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04837 and H281DRAFT_04838 overlap by 14 nucleotides H281DRAFT_04837: H281DRAFT_04837 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 271,828 to 273,570 _04837 H281DRAFT_04838: H281DRAFT_04838 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 273,557 to 275,284 _04838 Position (kb) 273 274 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 272.690 kb on + strand, within H281DRAFT_04837at 272.761 kb on - strand, within H281DRAFT_04837at 272.761 kb on - strand, within H281DRAFT_04837at 272.776 kb on + strand, within H281DRAFT_04837at 272.819 kb on + strand, within H281DRAFT_04837at 272.819 kb on + strand, within H281DRAFT_04837at 272.861 kb on - strand, within H281DRAFT_04837at 272.971 kb on + strand, within H281DRAFT_04837at 273.076 kb on + strand, within H281DRAFT_04837at 273.079 kb on - strandat 273.079 kb on - strand, within H281DRAFT_04837at 273.079 kb on - strand, within H281DRAFT_04837at 273.223 kb on + strand, within H281DRAFT_04837at 273.224 kb on - strand, within H281DRAFT_04837at 273.256 kb on - strand, within H281DRAFT_04837at 273.289 kb on + strand, within H281DRAFT_04837at 273.337 kb on + strand, within H281DRAFT_04837at 273.337 kb on + strand, within H281DRAFT_04837at 273.337 kb on + strand, within H281DRAFT_04837at 273.337 kb on + strand, within H281DRAFT_04837at 273.338 kb on - strand, within H281DRAFT_04837at 273.363 kb on + strand, within H281DRAFT_04837at 273.384 kb on + strand, within H281DRAFT_04837at 273.384 kb on + strand, within H281DRAFT_04837at 273.384 kb on + strand, within H281DRAFT_04837at 273.384 kb on + strand, within H281DRAFT_04837at 273.447 kb on + strandat 273.447 kb on + strandat 273.583 kb on - strandat 273.641 kb on + strandat 273.946 kb on - strand, within H281DRAFT_04838at 274.043 kb on + strand, within H281DRAFT_04838at 274.043 kb on + strand, within H281DRAFT_04838at 274.043 kb on + strand, within H281DRAFT_04838at 274.043 kb on + strand, within H281DRAFT_04838at 274.085 kb on + strand, within H281DRAFT_04838at 274.181 kb on + strand, within H281DRAFT_04838at 274.225 kb on + strand, within H281DRAFT_04838at 274.226 kb on - strand, within H281DRAFT_04838at 274.272 kb on - strand, within H281DRAFT_04838at 274.320 kb on - strand, within H281DRAFT_04838at 274.341 kb on - strand, within H281DRAFT_04838at 274.368 kb on + strand, within H281DRAFT_04838at 274.498 kb on + strand, within H281DRAFT_04838at 274.602 kb on + strand, within H281DRAFT_04838at 274.603 kb on - strand, within H281DRAFT_04838at 274.612 kb on + strand, within H281DRAFT_04838at 274.613 kb on - strand, within H281DRAFT_04838at 274.655 kb on + strand, within H281DRAFT_04838at 274.656 kb on - strand, within H281DRAFT_04838at 274.656 kb on - strand, within H281DRAFT_04838at 274.657 kb on + strand, within H281DRAFT_04838at 274.657 kb on + strand, within H281DRAFT_04838at 274.657 kb on + strand, within H281DRAFT_04838at 274.657 kb on + strand, within H281DRAFT_04838at 274.657 kb on + strand, within H281DRAFT_04838at 274.657 kb on + strand, within H281DRAFT_04838at 274.657 kb on + strand, within H281DRAFT_04838at 274.658 kb on - strand, within H281DRAFT_04838at 274.658 kb on - strand, within H281DRAFT_04838at 274.658 kb on - strand, within H281DRAFT_04838at 274.659 kb on + strand, within H281DRAFT_04838at 274.659 kb on + strand, within H281DRAFT_04838at 274.659 kb on + strand, within H281DRAFT_04838at 274.660 kb on - strand, within H281DRAFT_04838at 274.660 kb on - strand, within H281DRAFT_04838at 274.660 kb on - strand, within H281DRAFT_04838at 274.694 kb on + strand, within H281DRAFT_04838at 274.760 kb on + strand, within H281DRAFT_04838at 274.790 kb on - strand, within H281DRAFT_04838at 274.799 kb on + strand, within H281DRAFT_04838at 274.811 kb on - strand, within H281DRAFT_04838at 274.901 kb on + strand, within H281DRAFT_04838at 274.901 kb on + strand, within H281DRAFT_04838at 274.902 kb on - strand, within H281DRAFT_04838at 274.902 kb on - strand, within H281DRAFT_04838at 274.924 kb on + strand, within H281DRAFT_04838at 274.924 kb on + strand, within H281DRAFT_04838at 274.925 kb on - strand, within H281DRAFT_04838at 274.925 kb on - strand, within H281DRAFT_04838at 274.925 kb on - strand, within H281DRAFT_04838at 274.925 kb on - strand, within H281DRAFT_04838at 274.925 kb on - strand, within H281DRAFT_04838at 274.969 kb on + strand, within H281DRAFT_04838at 274.970 kb on - strand, within H281DRAFT_04838at 274.970 kb on - strand, within H281DRAFT_04838at 274.983 kb on + strand, within H281DRAFT_04838at 274.983 kb on + strand, within H281DRAFT_04838at 274.984 kb on - strand, within H281DRAFT_04838at 275.013 kb on + strand, within H281DRAFT_04838at 275.014 kb on - strand, within H281DRAFT_04838at 275.063 kb on + strand, within H281DRAFT_04838at 275.164 kb on + strandat 275.165 kb on - strandat 275.203 kb on + strandat 275.311 kb on + strandat 275.311 kb on + strandat 275.311 kb on + strandat 275.311 kb on + strandat 275.312 kb on - strandat 275.312 kb on - strandat 275.316 kb on + strandat 275.316 kb on + strandat 275.316 kb on + strandat 275.317 kb on - strandat 275.317 kb on - strandat 275.317 kb on - strandat 275.317 kb on - strandat 275.354 kb on + strandat 275.383 kb on + strandat 275.547 kb on + strandat 275.548 kb on - strandat 275.548 kb on - strandat 275.666 kb on - strandat 275.673 kb on + strandat 275.674 kb on - strandat 275.741 kb on + strandat 275.742 kb on - strandat 275.742 kb on - strandat 276.009 kb on + strandat 276.010 kb on - strandat 276.010 kb on - strandat 276.010 kb on - strandat 276.037 kb on + strandat 276.037 kb on + strandat 276.038 kb on - strandat 276.038 kb on - strandat 276.038 kb on - strandat 276.046 kb on + strandat 276.046 kb on + strandat 276.047 kb on - strandat 276.047 kb on - strandat 276.086 kb on + strandat 276.086 kb on + strandat 276.086 kb on + strandat 276.086 kb on + strandat 276.086 kb on + strandat 276.086 kb on + strandat 276.086 kb on + strandat 276.086 kb on + strandat 276.086 kb on + strandat 276.087 kb on - strandat 276.087 kb on - strandat 276.087 kb on - strandat 276.087 kb on - strandat 276.087 kb on - strandat 276.087 kb on - strandat 276.087 kb on - strandat 276.087 kb on - strandat 276.087 kb on - strandat 276.087 kb on - strandat 276.190 kb on + strandat 276.190 kb on + strandat 276.190 kb on + strandat 276.190 kb on + strandat 276.191 kb on - strandat 276.279 kb on + strandat 276.279 kb on + strandat 276.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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272,690 + H281DRAFT_04837 0.49 -1.3
272,761 - H281DRAFT_04837 0.54 -1.9
272,761 - H281DRAFT_04837 0.54 -1.6
272,776 + H281DRAFT_04837 0.54 -3.7
272,819 + H281DRAFT_04837 0.57 -1.2
272,819 + H281DRAFT_04837 0.57 -2.4
272,861 - H281DRAFT_04837 0.59 -1.6
272,971 + H281DRAFT_04837 0.66 -1.6
273,076 + H281DRAFT_04837 0.72 -1.4
273,079 - -1.3
273,079 - H281DRAFT_04837 0.72 -2.1
273,079 - H281DRAFT_04837 0.72 -1.0
273,223 + H281DRAFT_04837 0.80 -2.2
273,224 - H281DRAFT_04837 0.80 -2.8
273,256 - H281DRAFT_04837 0.82 -0.3
273,289 + H281DRAFT_04837 0.84 -0.4
273,337 + H281DRAFT_04837 0.87 -1.5
273,337 + H281DRAFT_04837 0.87 +0.0
273,337 + H281DRAFT_04837 0.87 -0.6
273,337 + H281DRAFT_04837 0.87 -1.3
273,338 - H281DRAFT_04837 0.87 -2.4
273,363 + H281DRAFT_04837 0.88 -0.1
273,384 + H281DRAFT_04837 0.89 -1.6
273,384 + H281DRAFT_04837 0.89 -1.7
273,384 + H281DRAFT_04837 0.89 +0.4
273,384 + H281DRAFT_04837 0.89 -1.1
273,447 + -0.5
273,447 + +0.7
273,583 - +0.6
273,641 + -0.8
273,946 - H281DRAFT_04838 0.23 +1.1
274,043 + H281DRAFT_04838 0.28 +0.1
274,043 + H281DRAFT_04838 0.28 +1.0
274,043 + H281DRAFT_04838 0.28 +0.3
274,043 + H281DRAFT_04838 0.28 +0.3
274,085 + H281DRAFT_04838 0.31 +0.1
274,181 + H281DRAFT_04838 0.36 +0.4
274,225 + H281DRAFT_04838 0.39 +1.2
274,226 - H281DRAFT_04838 0.39 +1.2
274,272 - H281DRAFT_04838 0.41 -1.0
274,320 - H281DRAFT_04838 0.44 +0.5
274,341 - H281DRAFT_04838 0.45 +3.4
274,368 + H281DRAFT_04838 0.47 +0.4
274,498 + H281DRAFT_04838 0.54 +0.6
274,602 + H281DRAFT_04838 0.60 +0.2
274,603 - H281DRAFT_04838 0.61 -0.8
274,612 + H281DRAFT_04838 0.61 -0.3
274,613 - H281DRAFT_04838 0.61 -0.0
274,655 + H281DRAFT_04838 0.64 +0.3
274,656 - H281DRAFT_04838 0.64 +1.0
274,656 - H281DRAFT_04838 0.64 +1.6
274,657 + H281DRAFT_04838 0.64 -0.8
274,657 + H281DRAFT_04838 0.64 +0.3
274,657 + H281DRAFT_04838 0.64 +1.0
274,657 + H281DRAFT_04838 0.64 +0.8
274,657 + H281DRAFT_04838 0.64 +0.7
274,657 + H281DRAFT_04838 0.64 +1.2
274,657 + H281DRAFT_04838 0.64 -0.1
274,658 - H281DRAFT_04838 0.64 +0.2
274,658 - H281DRAFT_04838 0.64 +0.2
274,658 - H281DRAFT_04838 0.64 +0.4
274,659 + H281DRAFT_04838 0.64 +0.1
274,659 + H281DRAFT_04838 0.64 +0.3
274,659 + H281DRAFT_04838 0.64 +0.5
274,660 - H281DRAFT_04838 0.64 -0.4
274,660 - H281DRAFT_04838 0.64 +0.8
274,660 - H281DRAFT_04838 0.64 +0.5
274,694 + H281DRAFT_04838 0.66 +0.0
274,760 + H281DRAFT_04838 0.70 +0.1
274,790 - H281DRAFT_04838 0.71 +0.6
274,799 + H281DRAFT_04838 0.72 -0.1
274,811 - H281DRAFT_04838 0.73 +0.3
274,901 + H281DRAFT_04838 0.78 -0.1
274,901 + H281DRAFT_04838 0.78 +0.2
274,902 - H281DRAFT_04838 0.78 +1.7
274,902 - H281DRAFT_04838 0.78 -0.0
274,924 + H281DRAFT_04838 0.79 -0.2
274,924 + H281DRAFT_04838 0.79 +0.8
274,925 - H281DRAFT_04838 0.79 -2.3
274,925 - H281DRAFT_04838 0.79 -1.3
274,925 - H281DRAFT_04838 0.79 +1.8
274,925 - H281DRAFT_04838 0.79 -0.6
274,925 - H281DRAFT_04838 0.79 -0.2
274,969 + H281DRAFT_04838 0.82 -0.5
274,970 - H281DRAFT_04838 0.82 +0.6
274,970 - H281DRAFT_04838 0.82 +0.9
274,983 + H281DRAFT_04838 0.83 -0.1
274,983 + H281DRAFT_04838 0.83 +1.1
274,984 - H281DRAFT_04838 0.83 -0.9
275,013 + H281DRAFT_04838 0.84 -0.1
275,014 - H281DRAFT_04838 0.84 -0.9
275,063 + H281DRAFT_04838 0.87 +0.6
275,164 + -0.1
275,165 - +0.5
275,203 + -0.0
275,311 + +0.9
275,311 + +0.1
275,311 + +0.7
275,311 + -0.1
275,312 - -0.0
275,312 - -0.1
275,316 + -0.3
275,316 + -1.1
275,316 + +0.5
275,317 - -0.2
275,317 - -1.5
275,317 - -1.2
275,317 - +0.3
275,354 + +0.4
275,383 + +0.4
275,547 + -0.3
275,548 - +1.3
275,548 - -0.2
275,666 - +0.7
275,673 + -0.6
275,674 - +0.6
275,741 + +0.4
275,742 - +1.0
275,742 - -0.3
276,009 + +1.3
276,010 - -1.0
276,010 - -0.0
276,010 - -2.3
276,037 + +0.5
276,037 + +0.5
276,038 - +1.2
276,038 - +0.6
276,038 - -1.7
276,046 + +0.3
276,046 + +0.2
276,047 - -0.4
276,047 - -1.4
276,086 + +1.2
276,086 + -0.2
276,086 + -0.9
276,086 + -0.1
276,086 + +0.5
276,086 + +0.1
276,086 + -0.9
276,086 + +0.7
276,086 + -0.3
276,087 - -0.9
276,087 - -0.9
276,087 - -0.3
276,087 - -0.2
276,087 - +0.5
276,087 - +0.6
276,087 - +0.1
276,087 - +0.4
276,087 - +0.9
276,087 - +0.8
276,190 + -0.1
276,190 + +1.2
276,190 + +0.1
276,190 + -0.4
276,191 - -0.3
276,279 + +0.5
276,279 + +0.3
276,280 - -0.0

Or see this region's nucleotide sequence