Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04789

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04788 and H281DRAFT_04789 are separated by 19 nucleotidesH281DRAFT_04789 and H281DRAFT_04790 are separated by 87 nucleotides H281DRAFT_04788: H281DRAFT_04788 - Glycosyltransferase involved in cell wall bisynthesis, at 212,466 to 213,539 _04788 H281DRAFT_04789: H281DRAFT_04789 - hypothetical protein, at 213,559 to 214,626 _04789 H281DRAFT_04790: H281DRAFT_04790 - hypothetical protein, at 214,714 to 215,349 _04790 Position (kb) 213 214 215Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 212.578 kb on + strand, within H281DRAFT_04788at 212.791 kb on - strand, within H281DRAFT_04788at 212.791 kb on - strand, within H281DRAFT_04788at 213.560 kb on + strandat 213.880 kb on + strand, within H281DRAFT_04789at 214.291 kb on + strand, within H281DRAFT_04789at 214.367 kb on + strand, within H281DRAFT_04789at 214.368 kb on - strand, within H281DRAFT_04789at 214.368 kb on - strand, within H281DRAFT_04789at 214.368 kb on - strand, within H281DRAFT_04789at 214.731 kb on - strandat 214.851 kb on + strand, within H281DRAFT_04790at 215.250 kb on - strand, within H281DRAFT_04790at 215.334 kb on - strandat 215.412 kb on - strandat 215.474 kb on + strandat 215.489 kb on + strandat 215.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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212,578 + H281DRAFT_04788 0.10 +2.2
212,791 - H281DRAFT_04788 0.30 -0.1
212,791 - H281DRAFT_04788 0.30 -2.8
213,560 + +0.5
213,880 + H281DRAFT_04789 0.30 -0.2
214,291 + H281DRAFT_04789 0.69 +0.0
214,367 + H281DRAFT_04789 0.76 -0.1
214,368 - H281DRAFT_04789 0.76 +0.2
214,368 - H281DRAFT_04789 0.76 -0.4
214,368 - H281DRAFT_04789 0.76 +0.3
214,731 - +0.6
214,851 + H281DRAFT_04790 0.22 +0.1
215,250 - H281DRAFT_04790 0.84 +0.9
215,334 - -1.3
215,412 - -0.8
215,474 + +0.4
215,489 + -0.5
215,493 - +0.2

Or see this region's nucleotide sequence