Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04691

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04690 and H281DRAFT_04691 are separated by 205 nucleotidesH281DRAFT_04691 and H281DRAFT_04692 are separated by 124 nucleotides H281DRAFT_04690: H281DRAFT_04690 - TIGR02099 family protein, at 96,563 to 100,750 _04690 H281DRAFT_04691: H281DRAFT_04691 - glutamate-ammonia-ligase adenylyltransferase, at 100,956 to 103,754 _04691 H281DRAFT_04692: H281DRAFT_04692 - DNA replication and repair protein RecN, at 103,879 to 105,549 _04692 Position (kb) 100 101 102 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 100.070 kb on + strand, within H281DRAFT_04690at 100.071 kb on - strand, within H281DRAFT_04690at 100.117 kb on - strand, within H281DRAFT_04690at 100.365 kb on + strandat 100.366 kb on - strandat 100.413 kb on - strandat 100.456 kb on + strandat 100.590 kb on + strandat 100.590 kb on + strandat 100.590 kb on + strandat 100.591 kb on - strandat 100.591 kb on - strandat 100.591 kb on - strandat 100.606 kb on - strandat 100.626 kb on + strandat 100.769 kb on - strandat 100.773 kb on + strandat 100.774 kb on - strandat 100.774 kb on - strandat 100.774 kb on - strandat 100.787 kb on - strandat 100.968 kb on - strandat 100.968 kb on - strandat 101.431 kb on + strand, within H281DRAFT_04691at 101.431 kb on + strand, within H281DRAFT_04691at 101.431 kb on + strand, within H281DRAFT_04691at 101.432 kb on - strand, within H281DRAFT_04691at 101.432 kb on - strand, within H281DRAFT_04691at 101.432 kb on - strand, within H281DRAFT_04691at 101.433 kb on + strand, within H281DRAFT_04691at 101.433 kb on + strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.551 kb on - strand, within H281DRAFT_04691at 101.551 kb on - strand, within H281DRAFT_04691at 101.631 kb on + strand, within H281DRAFT_04691at 101.631 kb on + strand, within H281DRAFT_04691at 101.638 kb on - strand, within H281DRAFT_04691at 101.638 kb on - strand, within H281DRAFT_04691at 101.769 kb on + strand, within H281DRAFT_04691at 101.878 kb on + strand, within H281DRAFT_04691at 101.910 kb on - strand, within H281DRAFT_04691at 102.166 kb on - strand, within H281DRAFT_04691at 102.166 kb on - strand, within H281DRAFT_04691at 102.229 kb on + strand, within H281DRAFT_04691at 102.229 kb on + strand, within H281DRAFT_04691at 102.229 kb on + strand, within H281DRAFT_04691at 102.521 kb on + strand, within H281DRAFT_04691at 102.574 kb on - strand, within H281DRAFT_04691at 102.574 kb on - strand, within H281DRAFT_04691at 102.574 kb on - strand, within H281DRAFT_04691at 102.574 kb on - strand, within H281DRAFT_04691at 102.654 kb on + strand, within H281DRAFT_04691at 102.655 kb on - strand, within H281DRAFT_04691at 102.913 kb on + strand, within H281DRAFT_04691at 102.914 kb on - strand, within H281DRAFT_04691at 103.014 kb on + strand, within H281DRAFT_04691at 103.014 kb on + strand, within H281DRAFT_04691at 103.015 kb on - strand, within H281DRAFT_04691at 103.077 kb on + strand, within H281DRAFT_04691at 103.078 kb on - strandat 103.078 kb on - strand, within H281DRAFT_04691at 103.078 kb on - strand, within H281DRAFT_04691at 103.078 kb on - strand, within H281DRAFT_04691at 103.087 kb on - strand, within H281DRAFT_04691at 103.103 kb on + strand, within H281DRAFT_04691at 103.103 kb on + strand, within H281DRAFT_04691at 103.104 kb on - strand, within H281DRAFT_04691at 103.287 kb on + strand, within H281DRAFT_04691at 103.342 kb on + strand, within H281DRAFT_04691at 103.342 kb on + strand, within H281DRAFT_04691at 103.343 kb on - strand, within H281DRAFT_04691at 103.343 kb on - strand, within H281DRAFT_04691at 103.427 kb on + strand, within H281DRAFT_04691at 103.428 kb on - strand, within H281DRAFT_04691at 103.428 kb on - strand, within H281DRAFT_04691at 103.491 kb on + strandat 103.491 kb on + strandat 103.492 kb on - strandat 103.492 kb on - strandat 104.116 kb on + strand, within H281DRAFT_04692at 104.259 kb on + strand, within H281DRAFT_04692at 104.259 kb on + strandat 104.260 kb on - strand, within H281DRAFT_04692at 104.357 kb on - strand, within H281DRAFT_04692at 104.457 kb on + strand, within H281DRAFT_04692at 104.458 kb on - strand, within H281DRAFT_04692at 104.474 kb on - strand, within H281DRAFT_04692

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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99,984 + H281DRAFT_04690 0.82 -1.2
99,984 + H281DRAFT_04690 0.82 -1.2
99,984 + H281DRAFT_04690 0.82 -0.5
99,984 + H281DRAFT_04690 0.82 -0.9
99,984 + H281DRAFT_04690 0.82 -1.3
99,984 + H281DRAFT_04690 0.82 -1.5
99,984 + H281DRAFT_04690 0.82 -0.5
99,984 + H281DRAFT_04690 0.82 +1.1
99,984 + H281DRAFT_04690 0.82 -0.8
99,984 + H281DRAFT_04690 0.82 -1.3
99,985 - H281DRAFT_04690 0.82 -0.4
99,985 - H281DRAFT_04690 0.82 -0.6
99,985 - H281DRAFT_04690 0.82 -1.3
99,985 - H281DRAFT_04690 0.82 -0.1
99,985 - H281DRAFT_04690 0.82 -0.6
99,985 - H281DRAFT_04690 0.82 -2.2
99,985 - H281DRAFT_04690 0.82 -2.7
99,985 - H281DRAFT_04690 0.82 +0.8
100,070 + H281DRAFT_04690 0.84 -0.1
100,071 - H281DRAFT_04690 0.84 -0.2
100,117 - H281DRAFT_04690 0.85 +0.3
100,365 + -0.9
100,366 - -1.0
100,413 - -0.7
100,456 + -1.0
100,590 + -3.0
100,590 + -0.9
100,590 + -0.7
100,591 - -0.5
100,591 - +1.7
100,591 - -1.0
100,606 - -1.9
100,626 + -1.0
100,769 - +0.8
100,773 + -0.7
100,774 - +0.4
100,774 - +0.8
100,774 - +0.7
100,787 - +1.2
100,968 - +5.2
100,968 - +4.7
101,431 + H281DRAFT_04691 0.17 +5.7
101,431 + H281DRAFT_04691 0.17 +2.1
101,431 + H281DRAFT_04691 0.17 +3.2
101,432 - H281DRAFT_04691 0.17 +5.7
101,432 - H281DRAFT_04691 0.17 +5.6
101,432 - H281DRAFT_04691 0.17 +4.8
101,433 + H281DRAFT_04691 0.17 +2.7
101,433 + H281DRAFT_04691 0.17 +5.7
101,434 - H281DRAFT_04691 0.17 +6.9
101,434 - H281DRAFT_04691 0.17 +6.4
101,434 - H281DRAFT_04691 0.17 +4.6
101,434 - H281DRAFT_04691 0.17 +6.6
101,434 - H281DRAFT_04691 0.17 +7.3
101,551 - H281DRAFT_04691 0.21 +4.7
101,551 - H281DRAFT_04691 0.21 +2.4
101,631 + H281DRAFT_04691 0.24 +4.2
101,631 + H281DRAFT_04691 0.24 +4.5
101,638 - H281DRAFT_04691 0.24 +5.6
101,638 - H281DRAFT_04691 0.24 +5.2
101,769 + H281DRAFT_04691 0.29 +1.4
101,878 + H281DRAFT_04691 0.33 -0.5
101,910 - H281DRAFT_04691 0.34 +4.8
102,166 - H281DRAFT_04691 0.43 +5.2
102,166 - H281DRAFT_04691 0.43 +5.8
102,229 + H281DRAFT_04691 0.45 +5.7
102,229 + H281DRAFT_04691 0.45 +2.9
102,229 + H281DRAFT_04691 0.45 +1.2
102,521 + H281DRAFT_04691 0.56 +4.2
102,574 - H281DRAFT_04691 0.58 +5.3
102,574 - H281DRAFT_04691 0.58 +6.5
102,574 - H281DRAFT_04691 0.58 +6.6
102,574 - H281DRAFT_04691 0.58 +6.7
102,654 + H281DRAFT_04691 0.61 -0.8
102,655 - H281DRAFT_04691 0.61 +5.1
102,913 + H281DRAFT_04691 0.70 +5.5
102,914 - H281DRAFT_04691 0.70 +5.0
103,014 + H281DRAFT_04691 0.74 +4.8
103,014 + H281DRAFT_04691 0.74 +5.4
103,015 - H281DRAFT_04691 0.74 +6.0
103,077 + H281DRAFT_04691 0.76 +5.7
103,078 - +9.1
103,078 - H281DRAFT_04691 0.76 +6.4
103,078 - H281DRAFT_04691 0.76 +5.5
103,078 - H281DRAFT_04691 0.76 +6.5
103,087 - H281DRAFT_04691 0.76 +5.3
103,103 + H281DRAFT_04691 0.77 +6.1
103,103 + H281DRAFT_04691 0.77 +5.8
103,104 - H281DRAFT_04691 0.77 +6.4
103,287 + H281DRAFT_04691 0.83 +7.1
103,342 + H281DRAFT_04691 0.85 +6.3
103,342 + H281DRAFT_04691 0.85 +5.8
103,343 - H281DRAFT_04691 0.85 +6.5
103,343 - H281DRAFT_04691 0.85 +6.2
103,427 + H281DRAFT_04691 0.88 +4.1
103,428 - H281DRAFT_04691 0.88 +5.8
103,428 - H281DRAFT_04691 0.88 +5.6
103,491 + +6.2
103,491 + +6.8
103,492 - +5.3
103,492 - +7.2
104,116 + H281DRAFT_04692 0.14 -0.3
104,259 + H281DRAFT_04692 0.23 -0.4
104,259 + +1.1
104,260 - H281DRAFT_04692 0.23 +0.2
104,357 - H281DRAFT_04692 0.29 -0.8
104,457 + H281DRAFT_04692 0.35 -0.2
104,458 - H281DRAFT_04692 0.35 -0.9
104,474 - H281DRAFT_04692 0.36 -0.6

Or see this region's nucleotide sequence