Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04497 and H281DRAFT_04498 are separated by 80 nucleotides H281DRAFT_04498 and H281DRAFT_04499 are separated by 69 nucleotides H281DRAFT_04499 and H281DRAFT_04500 are separated by 138 nucleotides H281DRAFT_04500 and H281DRAFT_04501 are separated by 251 nucleotides
H281DRAFT_04497: H281DRAFT_04497 - Pimeloyl-ACP methyl ester carboxylesterase, at 229,545 to 230,456
_04497
H281DRAFT_04498: H281DRAFT_04498 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 230,537 to 230,890
_04498
H281DRAFT_04499: H281DRAFT_04499 - GTP pyrophosphokinase, at 230,960 to 233,203
_04499
H281DRAFT_04500: H281DRAFT_04500 - tRNA_Val_GAC, at 233,342 to 233,418
_04500
H281DRAFT_04501: H281DRAFT_04501 - Ser-tRNA(Thr) hydrolase /threonyl-tRNA synthetase, at 233,670 to 235,577
_04501
Position (kb) 230
231
232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 229.961 kb on - strand, within H281DRAFT_04497 at 229.961 kb on - strand, within H281DRAFT_04497 at 230.124 kb on - strand, within H281DRAFT_04497 at 230.201 kb on + strand, within H281DRAFT_04497 at 230.236 kb on + strand, within H281DRAFT_04497 at 230.454 kb on + strand at 230.455 kb on - strand at 230.455 kb on - strand at 230.457 kb on + strand at 230.457 kb on + strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.458 kb on - strand at 230.517 kb on + strand at 230.517 kb on + strand at 230.517 kb on + strand at 230.518 kb on - strand at 230.518 kb on - strand at 230.522 kb on - strand at 230.604 kb on - strand, within H281DRAFT_04498 at 230.707 kb on + strand, within H281DRAFT_04498 at 230.735 kb on + strand, within H281DRAFT_04498 at 230.736 kb on - strand, within H281DRAFT_04498 at 230.736 kb on - strand, within H281DRAFT_04498 at 230.736 kb on - strand, within H281DRAFT_04498 at 230.736 kb on - strand, within H281DRAFT_04498 at 230.738 kb on - strand, within H281DRAFT_04498 at 230.738 kb on - strand, within H281DRAFT_04498 at 230.738 kb on - strand, within H281DRAFT_04498 at 230.738 kb on - strand, within H281DRAFT_04498 at 230.738 kb on - strand, within H281DRAFT_04498 at 231.384 kb on + strand, within H281DRAFT_04499 at 231.394 kb on - strand, within H281DRAFT_04499 at 231.429 kb on - strand, within H281DRAFT_04499 at 231.485 kb on + strand, within H281DRAFT_04499 at 231.485 kb on + strand, within H281DRAFT_04499 at 231.485 kb on + strand, within H281DRAFT_04499 at 231.485 kb on + strand, within H281DRAFT_04499 at 231.485 kb on + strand, within H281DRAFT_04499 at 231.485 kb on + strand, within H281DRAFT_04499 at 231.485 kb on + strand, within H281DRAFT_04499 at 231.485 kb on + strand, within H281DRAFT_04499 at 231.485 kb on + strand, within H281DRAFT_04499 at 231.486 kb on - strand, within H281DRAFT_04499 at 231.486 kb on - strand, within H281DRAFT_04499 at 231.486 kb on - strand, within H281DRAFT_04499 at 231.572 kb on + strand, within H281DRAFT_04499 at 231.572 kb on + strand, within H281DRAFT_04499 at 231.572 kb on + strand, within H281DRAFT_04499 at 231.573 kb on - strand, within H281DRAFT_04499 at 231.573 kb on - strand, within H281DRAFT_04499 at 231.573 kb on - strand, within H281DRAFT_04499 at 231.573 kb on - strand, within H281DRAFT_04499 at 231.573 kb on - strand, within H281DRAFT_04499 at 231.573 kb on - strand, within H281DRAFT_04499 at 231.573 kb on - strand, within H281DRAFT_04499 at 231.574 kb on + strand, within H281DRAFT_04499 at 231.575 kb on - strand, within H281DRAFT_04499 at 231.575 kb on - strand, within H281DRAFT_04499 at 231.623 kb on + strand, within H281DRAFT_04499 at 231.623 kb on + strand, within H281DRAFT_04499 at 231.624 kb on - strand, within H281DRAFT_04499 at 231.624 kb on - strand, within H281DRAFT_04499 at 231.624 kb on - strand, within H281DRAFT_04499 at 231.624 kb on - strand, within H281DRAFT_04499 at 231.687 kb on + strand, within H281DRAFT_04499 at 231.706 kb on + strand, within H281DRAFT_04499 at 231.707 kb on - strand, within H281DRAFT_04499 at 231.707 kb on - strand, within H281DRAFT_04499 at 231.707 kb on - strand, within H281DRAFT_04499 at 231.707 kb on - strand, within H281DRAFT_04499 at 231.707 kb on - strand, within H281DRAFT_04499 at 231.710 kb on + strand, within H281DRAFT_04499 at 231.710 kb on + strand, within H281DRAFT_04499 at 231.710 kb on + strand, within H281DRAFT_04499 at 231.710 kb on + strand, within H281DRAFT_04499 at 231.710 kb on + strand, within H281DRAFT_04499 at 231.710 kb on + strand, within H281DRAFT_04499 at 231.710 kb on + strand, within H281DRAFT_04499 at 231.710 kb on + strand, within H281DRAFT_04499 at 231.711 kb on - strand, within H281DRAFT_04499 at 231.711 kb on - strand, within H281DRAFT_04499 at 231.711 kb on - strand, within H281DRAFT_04499 at 231.711 kb on - strand, within H281DRAFT_04499 at 231.711 kb on - strand, within H281DRAFT_04499 at 231.711 kb on - strand, within H281DRAFT_04499 at 231.712 kb on + strand, within H281DRAFT_04499 at 231.712 kb on + strand, within H281DRAFT_04499 at 231.712 kb on + strand, within H281DRAFT_04499 at 231.712 kb on + strand, within H281DRAFT_04499 at 231.869 kb on + strand, within H281DRAFT_04499 at 231.870 kb on - strand, within H281DRAFT_04499 at 231.870 kb on - strand, within H281DRAFT_04499 at 231.896 kb on + strand, within H281DRAFT_04499 at 231.897 kb on - strand, within H281DRAFT_04499 at 231.897 kb on - strand, within H281DRAFT_04499 at 231.898 kb on + strand, within H281DRAFT_04499 at 231.898 kb on + strand, within H281DRAFT_04499 at 231.898 kb on + strand, within H281DRAFT_04499 at 231.898 kb on + strand, within H281DRAFT_04499 at 231.911 kb on - strand, within H281DRAFT_04499 at 231.911 kb on - strand, within H281DRAFT_04499 at 231.911 kb on - strand, within H281DRAFT_04499 at 231.911 kb on - strand, within H281DRAFT_04499 at 231.987 kb on - strand, within H281DRAFT_04499 at 232.065 kb on - strand, within H281DRAFT_04499 at 232.065 kb on - strand, within H281DRAFT_04499 at 232.167 kb on + strand, within H281DRAFT_04499 at 232.168 kb on - strand, within H281DRAFT_04499 at 232.199 kb on + strand, within H281DRAFT_04499 at 232.199 kb on + strand, within H281DRAFT_04499 at 232.200 kb on - strand, within H281DRAFT_04499 at 232.200 kb on - strand, within H281DRAFT_04499 at 232.200 kb on - strand, within H281DRAFT_04499 at 232.277 kb on - strand, within H281DRAFT_04499 at 232.433 kb on - strand, within H281DRAFT_04499 at 232.482 kb on + strand, within H281DRAFT_04499 at 232.483 kb on - strand, within H281DRAFT_04499 at 232.483 kb on - strand, within H281DRAFT_04499 at 232.718 kb on - strand, within H281DRAFT_04499 at 233.269 kb on + strand at 233.294 kb on - strand at 233.325 kb on + strand at 233.489 kb on + strand at 233.634 kb on + strand at 233.636 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 229,961 - H281DRAFT_04497 0.46 +0.4 229,961 - H281DRAFT_04497 0.46 -1.0 230,124 - H281DRAFT_04497 0.63 +0.5 230,201 + H281DRAFT_04497 0.72 +0.2 230,236 + H281DRAFT_04497 0.76 -0.1 230,454 + +0.4 230,455 - +0.2 230,455 - -0.5 230,457 + -0.7 230,457 + -0.3 230,458 - +0.4 230,458 - +1.2 230,458 - -1.6 230,517 + -0.4 230,517 + +0.7 230,517 + -0.1 230,518 - -0.3 230,518 - +1.2 230,522 - +0.1 230,604 - H281DRAFT_04498 0.19 +0.5 230,707 + H281DRAFT_04498 0.48 -0.3 230,735 + H281DRAFT_04498 0.56 +0.5 230,736 - H281DRAFT_04498 0.56 +0.6 230,736 - H281DRAFT_04498 0.56 -0.6 230,736 - H281DRAFT_04498 0.56 +0.7 230,736 - H281DRAFT_04498 0.56 +0.7 230,738 - H281DRAFT_04498 0.57 +0.7 230,738 - H281DRAFT_04498 0.57 +1.8 230,738 - H281DRAFT_04498 0.57 +0.7 230,738 - H281DRAFT_04498 0.57 +0.3 230,738 - H281DRAFT_04498 0.57 +0.5 231,384 + H281DRAFT_04499 0.19 +0.9 231,394 - H281DRAFT_04499 0.19 +1.4 231,429 - H281DRAFT_04499 0.21 +1.7 231,485 + H281DRAFT_04499 0.23 +1.5 231,485 + H281DRAFT_04499 0.23 +1.1 231,485 + H281DRAFT_04499 0.23 +2.2 231,485 + H281DRAFT_04499 0.23 +2.0 231,485 + H281DRAFT_04499 0.23 +0.8 231,485 + H281DRAFT_04499 0.23 +1.6 231,485 + H281DRAFT_04499 0.23 +2.8 231,485 + H281DRAFT_04499 0.23 +1.7 231,485 + H281DRAFT_04499 0.23 +1.9 231,486 - H281DRAFT_04499 0.23 +1.0 231,486 - H281DRAFT_04499 0.23 +1.5 231,486 - H281DRAFT_04499 0.23 +1.1 231,572 + H281DRAFT_04499 0.27 +2.3 231,572 + H281DRAFT_04499 0.27 +1.1 231,572 + H281DRAFT_04499 0.27 -0.5 231,573 - H281DRAFT_04499 0.27 +1.2 231,573 - H281DRAFT_04499 0.27 +0.4 231,573 - H281DRAFT_04499 0.27 +2.5 231,573 - H281DRAFT_04499 0.27 +1.1 231,573 - H281DRAFT_04499 0.27 +1.3 231,573 - H281DRAFT_04499 0.27 +1.2 231,573 - H281DRAFT_04499 0.27 +1.1 231,574 + H281DRAFT_04499 0.27 +1.7 231,575 - H281DRAFT_04499 0.27 +0.9 231,575 - H281DRAFT_04499 0.27 +0.8 231,623 + H281DRAFT_04499 0.30 -0.3 231,623 + H281DRAFT_04499 0.30 +0.5 231,624 - H281DRAFT_04499 0.30 +1.1 231,624 - H281DRAFT_04499 0.30 +1.4 231,624 - H281DRAFT_04499 0.30 +1.5 231,624 - H281DRAFT_04499 0.30 +2.3 231,687 + H281DRAFT_04499 0.32 +0.1 231,706 + H281DRAFT_04499 0.33 +2.3 231,707 - H281DRAFT_04499 0.33 +1.4 231,707 - H281DRAFT_04499 0.33 +0.5 231,707 - H281DRAFT_04499 0.33 +1.3 231,707 - H281DRAFT_04499 0.33 +1.4 231,707 - H281DRAFT_04499 0.33 +1.3 231,710 + H281DRAFT_04499 0.33 +1.4 231,710 + H281DRAFT_04499 0.33 +0.7 231,710 + H281DRAFT_04499 0.33 +0.8 231,710 + H281DRAFT_04499 0.33 +2.6 231,710 + H281DRAFT_04499 0.33 +0.4 231,710 + H281DRAFT_04499 0.33 +0.4 231,710 + H281DRAFT_04499 0.33 +1.2 231,710 + H281DRAFT_04499 0.33 +1.1 231,711 - H281DRAFT_04499 0.33 +1.3 231,711 - H281DRAFT_04499 0.33 +1.9 231,711 - H281DRAFT_04499 0.33 +1.7 231,711 - H281DRAFT_04499 0.33 -1.0 231,711 - H281DRAFT_04499 0.33 +1.4 231,711 - H281DRAFT_04499 0.33 +0.7 231,712 + H281DRAFT_04499 0.34 +2.2 231,712 + H281DRAFT_04499 0.34 +1.5 231,712 + H281DRAFT_04499 0.34 +1.1 231,712 + H281DRAFT_04499 0.34 +1.8 231,869 + H281DRAFT_04499 0.41 +0.4 231,870 - H281DRAFT_04499 0.41 +0.9 231,870 - H281DRAFT_04499 0.41 +1.0 231,896 + H281DRAFT_04499 0.42 +0.9 231,897 - H281DRAFT_04499 0.42 +1.6 231,897 - H281DRAFT_04499 0.42 +0.6 231,898 + H281DRAFT_04499 0.42 +0.7 231,898 + H281DRAFT_04499 0.42 +2.0 231,898 + H281DRAFT_04499 0.42 +1.4 231,898 + H281DRAFT_04499 0.42 +1.3 231,911 - H281DRAFT_04499 0.42 +1.9 231,911 - H281DRAFT_04499 0.42 +1.8 231,911 - H281DRAFT_04499 0.42 +2.0 231,911 - H281DRAFT_04499 0.42 +3.2 231,987 - H281DRAFT_04499 0.46 +0.4 232,065 - H281DRAFT_04499 0.49 +2.3 232,065 - H281DRAFT_04499 0.49 +0.3 232,167 + H281DRAFT_04499 0.54 +2.6 232,168 - H281DRAFT_04499 0.54 +0.7 232,199 + H281DRAFT_04499 0.55 +1.9 232,199 + H281DRAFT_04499 0.55 +0.4 232,200 - H281DRAFT_04499 0.55 +1.9 232,200 - H281DRAFT_04499 0.55 +0.6 232,200 - H281DRAFT_04499 0.55 +1.4 232,277 - H281DRAFT_04499 0.59 +1.1 232,433 - H281DRAFT_04499 0.66 +1.4 232,482 + H281DRAFT_04499 0.68 +0.2 232,483 - H281DRAFT_04499 0.68 +1.4 232,483 - H281DRAFT_04499 0.68 +1.3 232,718 - H281DRAFT_04499 0.78 +2.0 233,269 + -0.9 233,294 - +0.3 233,325 + -1.8 233,489 + -1.1 233,634 + +0.6 233,636 + +0.2
Or see this region's nucleotide sequence