Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04359

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04358 and H281DRAFT_04359 overlap by 4 nucleotidesH281DRAFT_04359 and H281DRAFT_04360 are separated by 150 nucleotides H281DRAFT_04358: H281DRAFT_04358 - serine protease Do, at 74,425 to 75,951 _04358 H281DRAFT_04359: H281DRAFT_04359 - Glutaredoxin and related proteins, at 75,948 to 76,211 _04359 H281DRAFT_04360: H281DRAFT_04360 - GTP-binding protein LepA, at 76,362 to 78,155 _04360 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 75.144 kb on - strand, within H281DRAFT_04358at 75.197 kb on + strand, within H281DRAFT_04358at 75.197 kb on + strand, within H281DRAFT_04358at 75.220 kb on + strand, within H281DRAFT_04358at 75.220 kb on + strand, within H281DRAFT_04358at 75.220 kb on + strand, within H281DRAFT_04358at 75.240 kb on + strand, within H281DRAFT_04358at 75.241 kb on - strand, within H281DRAFT_04358at 75.552 kb on + strand, within H281DRAFT_04358at 75.552 kb on + strand, within H281DRAFT_04358at 75.553 kb on - strand, within H281DRAFT_04358at 76.055 kb on - strand, within H281DRAFT_04359at 76.098 kb on + strand, within H281DRAFT_04359at 76.099 kb on - strand, within H281DRAFT_04359at 76.302 kb on + strandat 76.302 kb on + strandat 76.302 kb on + strandat 76.306 kb on + strandat 76.370 kb on + strandat 76.371 kb on - strandat 76.572 kb on + strand, within H281DRAFT_04360at 76.572 kb on + strand, within H281DRAFT_04360at 76.617 kb on + strand, within H281DRAFT_04360at 76.711 kb on - strand, within H281DRAFT_04360at 76.811 kb on - strand, within H281DRAFT_04360at 76.968 kb on + strand, within H281DRAFT_04360

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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75,144 - H281DRAFT_04358 0.47 -0.3
75,197 + H281DRAFT_04358 0.51 +1.3
75,197 + H281DRAFT_04358 0.51 -0.2
75,220 + H281DRAFT_04358 0.52 -1.0
75,220 + H281DRAFT_04358 0.52 +0.2
75,220 + H281DRAFT_04358 0.52 -1.8
75,240 + H281DRAFT_04358 0.53 -0.2
75,241 - H281DRAFT_04358 0.53 -0.0
75,552 + H281DRAFT_04358 0.74 -0.9
75,552 + H281DRAFT_04358 0.74 +1.3
75,553 - H281DRAFT_04358 0.74 -0.1
76,055 - H281DRAFT_04359 0.41 +0.6
76,098 + H281DRAFT_04359 0.57 +0.9
76,099 - H281DRAFT_04359 0.57 +1.2
76,302 + -0.4
76,302 + +2.0
76,302 + +0.0
76,306 + +0.6
76,370 + -0.5
76,371 - -0.6
76,572 + H281DRAFT_04360 0.12 -0.0
76,572 + H281DRAFT_04360 0.12 -0.6
76,617 + H281DRAFT_04360 0.14 +0.7
76,711 - H281DRAFT_04360 0.19 +2.6
76,811 - H281DRAFT_04360 0.25 -2.5
76,968 + H281DRAFT_04360 0.34 -2.5

Or see this region's nucleotide sequence