Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04322

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04321 and H281DRAFT_04322 are separated by 151 nucleotidesH281DRAFT_04322 and H281DRAFT_04323 are separated by 322 nucleotidesH281DRAFT_04323 and H281DRAFT_04324 overlap by 4 nucleotides H281DRAFT_04321: H281DRAFT_04321 - DNA helicase-2 / ATP-dependent DNA helicase PcrA, at 38,595 to 40,724 _04321 H281DRAFT_04322: H281DRAFT_04322 - Protein of unknown function (DUF4088), at 40,876 to 41,643 _04322 H281DRAFT_04323: H281DRAFT_04323 - Branched-chain amino acid transport protein, at 41,966 to 42,295 _04323 H281DRAFT_04324: H281DRAFT_04324 - 4-azaleucine resistance probable transporter AzlC, at 42,292 to 43,029 _04324 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1at 39.920 kb on - strand, within H281DRAFT_04321at 39.926 kb on - strand, within H281DRAFT_04321at 40.095 kb on + strand, within H281DRAFT_04321at 40.096 kb on - strand, within H281DRAFT_04321at 40.096 kb on - strand, within H281DRAFT_04321at 40.147 kb on - strand, within H281DRAFT_04321at 40.230 kb on + strand, within H281DRAFT_04321at 40.231 kb on - strand, within H281DRAFT_04321at 40.231 kb on - strand, within H281DRAFT_04321at 40.231 kb on - strand, within H281DRAFT_04321at 40.231 kb on - strand, within H281DRAFT_04321at 40.324 kb on - strand, within H281DRAFT_04321at 40.464 kb on + strand, within H281DRAFT_04321at 40.500 kb on - strand, within H281DRAFT_04321at 40.500 kb on - strand, within H281DRAFT_04321at 40.542 kb on - strandat 40.542 kb on - strandat 40.542 kb on - strandat 40.614 kb on + strandat 40.615 kb on - strandat 40.615 kb on - strandat 40.615 kb on - strandat 40.837 kb on - strandat 40.843 kb on + strandat 40.843 kb on + strandat 40.844 kb on - strandat 40.844 kb on - strandat 40.967 kb on + strand, within H281DRAFT_04322at 41.009 kb on + strand, within H281DRAFT_04322at 41.010 kb on - strand, within H281DRAFT_04322at 41.144 kb on + strand, within H281DRAFT_04322at 41.145 kb on - strand, within H281DRAFT_04322at 41.442 kb on - strand, within H281DRAFT_04322at 41.442 kb on - strand, within H281DRAFT_04322at 41.442 kb on - strand, within H281DRAFT_04322at 41.631 kb on + strandat 41.631 kb on + strandat 41.771 kb on - strandat 41.836 kb on + strandat 41.836 kb on + strandat 41.836 kb on + strandat 41.944 kb on + strandat 41.944 kb on + strandat 41.945 kb on - strandat 41.945 kb on - strandat 42.057 kb on - strand, within H281DRAFT_04323at 42.288 kb on + strandat 42.289 kb on - strandat 42.289 kb on - strandat 42.289 kb on - strandat 42.289 kb on - strandat 42.355 kb on + strandat 42.355 kb on + strandat 42.404 kb on + strand, within H281DRAFT_04324at 42.404 kb on + strand, within H281DRAFT_04324at 42.405 kb on - strand, within H281DRAFT_04324at 42.405 kb on - strand, within H281DRAFT_04324at 42.462 kb on - strand, within H281DRAFT_04324at 42.599 kb on + strand, within H281DRAFT_04324at 42.626 kb on + strand, within H281DRAFT_04324at 42.626 kb on + strand, within H281DRAFT_04324at 42.627 kb on - strand, within H281DRAFT_04324

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
remove
39,920 - H281DRAFT_04321 0.62 +0.2
39,926 - H281DRAFT_04321 0.62 +1.5
40,095 + H281DRAFT_04321 0.70 -0.2
40,096 - H281DRAFT_04321 0.70 +0.8
40,096 - H281DRAFT_04321 0.70 -0.0
40,147 - H281DRAFT_04321 0.73 -1.8
40,230 + H281DRAFT_04321 0.77 -0.1
40,231 - H281DRAFT_04321 0.77 +0.1
40,231 - H281DRAFT_04321 0.77 -0.9
40,231 - H281DRAFT_04321 0.77 -0.7
40,231 - H281DRAFT_04321 0.77 -0.1
40,324 - H281DRAFT_04321 0.81 -0.7
40,464 + H281DRAFT_04321 0.88 +0.5
40,500 - H281DRAFT_04321 0.89 +0.6
40,500 - H281DRAFT_04321 0.89 -0.1
40,542 - +0.6
40,542 - -0.9
40,542 - -2.0
40,614 + +0.3
40,615 - -1.1
40,615 - -0.5
40,615 - +1.0
40,837 - +0.7
40,843 + -0.6
40,843 + +0.1
40,844 - +0.1
40,844 - +0.6
40,967 + H281DRAFT_04322 0.12 -0.3
41,009 + H281DRAFT_04322 0.17 -1.0
41,010 - H281DRAFT_04322 0.17 +0.3
41,144 + H281DRAFT_04322 0.35 +0.5
41,145 - H281DRAFT_04322 0.35 -2.2
41,442 - H281DRAFT_04322 0.74 -2.5
41,442 - H281DRAFT_04322 0.74 +0.9
41,442 - H281DRAFT_04322 0.74 -0.4
41,631 + +0.3
41,631 + +0.6
41,771 - +0.6
41,836 + -0.4
41,836 + +0.7
41,836 + +0.2
41,944 + +0.6
41,944 + -0.1
41,945 - +0.1
41,945 - -1.6
42,057 - H281DRAFT_04323 0.28 -0.1
42,288 + +0.3
42,289 - -1.8
42,289 - +0.9
42,289 - +0.7
42,289 - -0.1
42,355 + -0.6
42,355 + -0.6
42,404 + H281DRAFT_04324 0.15 -0.3
42,404 + H281DRAFT_04324 0.15 +0.0
42,405 - H281DRAFT_04324 0.15 +1.1
42,405 - H281DRAFT_04324 0.15 +0.2
42,462 - H281DRAFT_04324 0.23 -2.3
42,599 + H281DRAFT_04324 0.42 +0.6
42,626 + H281DRAFT_04324 0.45 +1.1
42,626 + H281DRAFT_04324 0.45 -0.6
42,627 - H281DRAFT_04324 0.45 -0.5

Or see this region's nucleotide sequence