Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04141

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04139 and H281DRAFT_04140 are separated by 231 nucleotidesH281DRAFT_04140 and H281DRAFT_04141 are separated by 41 nucleotidesH281DRAFT_04141 and H281DRAFT_04142 are separated by 129 nucleotidesH281DRAFT_04142 and H281DRAFT_04143 are separated by 37 nucleotides H281DRAFT_04139: H281DRAFT_04139 - peptide-methionine (S)-S-oxide reductase, at 249,932 to 250,480 _04139 H281DRAFT_04140: H281DRAFT_04140 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 250,712 to 251,245 _04140 H281DRAFT_04141: H281DRAFT_04141 - transcriptional regulator, AsnC family, at 251,287 to 251,802 _04141 H281DRAFT_04142: H281DRAFT_04142 - Kynurenine formamidase, at 251,932 to 252,570 _04142 H281DRAFT_04143: H281DRAFT_04143 - Kynureninase, at 252,608 to 253,858 _04143 Position (kb) 251 252Strain fitness (log2 ratio) -2 -1 0 1 2at 250.347 kb on + strand, within H281DRAFT_04139at 250.347 kb on + strand, within H281DRAFT_04139at 250.348 kb on - strand, within H281DRAFT_04139at 250.348 kb on - strand, within H281DRAFT_04139at 250.378 kb on - strand, within H281DRAFT_04139at 250.416 kb on + strand, within H281DRAFT_04139at 250.416 kb on + strand, within H281DRAFT_04139at 250.417 kb on - strand, within H281DRAFT_04139at 250.513 kb on - strandat 250.534 kb on - strandat 250.540 kb on + strandat 250.541 kb on - strandat 250.663 kb on + strandat 250.664 kb on - strandat 250.871 kb on - strand, within H281DRAFT_04140at 250.871 kb on - strand, within H281DRAFT_04140at 250.959 kb on - strand, within H281DRAFT_04140at 250.995 kb on + strand, within H281DRAFT_04140at 250.995 kb on + strand, within H281DRAFT_04140at 250.995 kb on + strand, within H281DRAFT_04140at 250.996 kb on - strand, within H281DRAFT_04140at 250.996 kb on - strand, within H281DRAFT_04140at 250.996 kb on - strand, within H281DRAFT_04140at 250.996 kb on - strand, within H281DRAFT_04140at 251.040 kb on + strand, within H281DRAFT_04140at 251.041 kb on - strand, within H281DRAFT_04140at 251.088 kb on + strand, within H281DRAFT_04140at 251.244 kb on - strandat 251.413 kb on - strand, within H281DRAFT_04141at 251.413 kb on - strand, within H281DRAFT_04141at 251.413 kb on - strand, within H281DRAFT_04141at 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strandat 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strand, within H281DRAFT_04141at 251.414 kb on + strandat 251.477 kb on + strand, within H281DRAFT_04141at 251.478 kb on - strand, within H281DRAFT_04141at 251.478 kb on - strand, within H281DRAFT_04141at 251.802 kb on + strandat 251.835 kb on - strandat 251.896 kb on + strandat 251.896 kb on + strandat 251.897 kb on - strandat 251.897 kb on - strandat 251.897 kb on - strandat 251.897 kb on - strandat 251.907 kb on - strandat 252.106 kb on + strand, within H281DRAFT_04142at 252.137 kb on + strand, within H281DRAFT_04142at 252.151 kb on + strand, within H281DRAFT_04142at 252.152 kb on - strand, within H281DRAFT_04142at 252.252 kb on - strand, within H281DRAFT_04142at 252.481 kb on + strand, within H281DRAFT_04142at 252.694 kb on + strandat 252.694 kb on + strandat 252.695 kb on - strandat 252.695 kb on - strandat 252.695 kb on - strandat 252.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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250,347 + H281DRAFT_04139 0.76 -0.2
250,347 + H281DRAFT_04139 0.76 +0.5
250,348 - H281DRAFT_04139 0.76 -0.3
250,348 - H281DRAFT_04139 0.76 -0.6
250,378 - H281DRAFT_04139 0.81 +1.0
250,416 + H281DRAFT_04139 0.88 -0.2
250,416 + H281DRAFT_04139 0.88 -0.1
250,417 - H281DRAFT_04139 0.88 -0.0
250,513 - -0.9
250,534 - -0.4
250,540 + +1.1
250,541 - -1.0
250,663 + +1.2
250,664 - -0.3
250,871 - H281DRAFT_04140 0.30 -0.2
250,871 - H281DRAFT_04140 0.30 +1.0
250,959 - H281DRAFT_04140 0.46 -0.3
250,995 + H281DRAFT_04140 0.53 -2.0
250,995 + H281DRAFT_04140 0.53 +1.2
250,995 + H281DRAFT_04140 0.53 -0.5
250,996 - H281DRAFT_04140 0.53 +0.4
250,996 - H281DRAFT_04140 0.53 +0.5
250,996 - H281DRAFT_04140 0.53 +0.3
250,996 - H281DRAFT_04140 0.53 +0.4
251,040 + H281DRAFT_04140 0.61 -0.2
251,041 - H281DRAFT_04140 0.62 -1.4
251,088 + H281DRAFT_04140 0.70 -0.4
251,244 - +0.2
251,413 - H281DRAFT_04141 0.24 -0.6
251,413 - H281DRAFT_04141 0.24 -0.0
251,413 - H281DRAFT_04141 0.24 -0.5
251,414 + H281DRAFT_04141 0.25 +0.3
251,414 + H281DRAFT_04141 0.25 +0.3
251,414 + +2.5
251,414 + H281DRAFT_04141 0.25 +0.7
251,414 + H281DRAFT_04141 0.25 -0.2
251,414 + H281DRAFT_04141 0.25 -0.4
251,414 + +1.0
251,477 + H281DRAFT_04141 0.37 +0.7
251,478 - H281DRAFT_04141 0.37 +0.5
251,478 - H281DRAFT_04141 0.37 -0.3
251,802 + +0.1
251,835 - -0.5
251,896 + +1.0
251,896 + +0.5
251,897 - +0.1
251,897 - -0.4
251,897 - -0.8
251,897 - +1.7
251,907 - +0.8
252,106 + H281DRAFT_04142 0.27 -1.2
252,137 + H281DRAFT_04142 0.32 +0.4
252,151 + H281DRAFT_04142 0.34 +0.3
252,152 - H281DRAFT_04142 0.34 -0.1
252,252 - H281DRAFT_04142 0.50 +0.0
252,481 + H281DRAFT_04142 0.86 +0.6
252,694 + -1.7
252,694 + +0.8
252,695 - +0.9
252,695 - +0.8
252,695 - +0.8
252,699 - +0.6

Or see this region's nucleotide sequence